About Ridgeia piscesae

Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Ridgeia piscesaeAnnelidatube wormsHydrothermal vent2,196 the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W)27915

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
R07B-5658.2MbContig2022JAODUO01Universite de MontrealPRJNA78643894%31,703
ASM2569855v1574.96MbScaffold2022JALOCR01Third Institute of Oceanography, Ministry of Natural Resources, PRCPRJNA82620691.70%24,096

References
TitleJournalPubmed ID
Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea PolychaetesMolecular Biology and Evolution37494294
The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environmentBMC Genomics36774470

Gene Information

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Gene IDDescription
KAK2189526.1
KAK2189527.1
KAK2189528.1IONOTROPIC GLUTAMATE RECEPTOR
KAK2189529.1IONOTROPIC GLUTAMATE RECEPTOR
KAK2189530.1IONOTROPIC GLUTAMATE RECEPTOR
KAK2189531.1IONOTROPIC GLUTAMATE RECEPTOR
KAK2189532.1
KAK2189533.1SERINE PROTEASE INHIBITOR, SERPIN
KAK2189534.1CENTROSOMAL PROTEIN CEP126
KAK2189535.1MONOCARBOXYLATE TRANSPORTER
KAK2189536.1ZINC FINGER PROTEIN 294
KAK2189537.1
KAK2189538.1
KAK2189539.1REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
KAK2189540.1E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER
KAK2189541.1UNCHARACTERIZED
KAK2189542.1MYOSIN
KAK2189543.1
KAK2189544.1
KAK2189545.1
KAK2189546.1SERINE PROTEASE INHIBITOR, SERPIN
KAK2189547.1SERINE PROTEASE INHIBITOR, SERPIN
KAK2189548.1SERINE PROTEASE INHIBITOR, SERPIN
KAK2189549.1SERINE PROTEASE INHIBITOR, SERPIN
KAK2189550.1SERINE PROTEASE INHIBITOR, SERPIN
KAK2189551.1SERINE PROTEASE INHIBITOR, SERPIN
KAK2189552.1SERINE PROTEASE INHIBITOR, SERPIN
KAK2189553.1SERINE PROTEASE INHIBITOR, SERPIN
KAK2189554.1SERINE PROTEASE INHIBITOR, SERPIN
KAK2189555.1
KAK2189556.1
KAK2189508.1RAG1-ACTIVATING PROTEIN 1
KAK2189509.1DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED
KAK2189510.1SUCCINATE DEHYDROGENASE ASSEMBLY FACTOR 4, MITOCHONDRIAL
KAK2189511.1PEPTIDASE
KAK2189512.1
KAK2189482.1UBIQUITIN-LIKE DOMAIN-CONTAINING PROTEIN
KAK2189483.1DBX
KAK2189484.1ZGC:172139
KAK2189485.1STIMULATED BY RETINOIC ACID GENE 8 PROTEIN HOMOLOG
KAK2189486.1N-ACETYLGALACTOSAMINYLTRANSFERASE
KAK2189487.1AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED
KAK2189488.1-
KAK2189489.1TUBULIN POLYGLUTAMYLASE COMPLEX SUBUNIT 1
KAK2189490.1
KAK2189491.1
KAK2189492.1
KAK2189493.1
KAK2189494.1
KAK2189495.1AGAP011099-PA
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