About Branchipolynoe longqiensis

Branchipolynoe longqiensis is a species of scale worm in the family Polynoidae, discovered in the Longqi hydrothermal vent field on the Southwest Indian Ridge. This species is distinguished by its biramous parapodia with reduced notopodia, stout notosetae, and branchiae with short terminal filaments. Adapted to extreme hydrothermal vent environments, Branchipolynoe longqiensis contributes to the unique biodiversity of these ecosystems and provides insights into the adaptations of organisms to high-temperature and chemically rich habitats.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Errantia (Subclass); Phyllodocida (Order); Aphroditiformia (Suborder); Polynoidae (Family); Macellicephalinae (Subfamily); Lepidonotopodini (Tribe); Branchipolynoe (Genus); Branchipolynoe longqiensis (Species)

Original Name

Branchipolynoe longqiensis Zhou, Zhang, Lu & Wang, 2017

Key Reference Paper

1. Zhou Y, Zhang D, Lu B, et al. Description of a new branchiate scale-worm (Polychaeta: Polynoidae) from the hydrothermal vent on Southwest Indian Ocean Ridge[J]. Zootaxa, 2017, 4282(1): 123-134. (Zhou et al., 2017)
2. He X, Wang H, Xu T, et al. Genomic analysis of a scale worm provides insights into its adaptation to deep-sea hydrothermal vents[J]. Genome Biology and Evolution, 2023, 15(7): evad125. (He et al., 2023)

Description

Body short, slightly tapered anteriorly and posteriorly, flattened ventrally and arched dorsally. 21 segments with 10 pairs of elytra and short elytrophores present on segments 2, 4, 5, 7, 9, 11, 13, 15, 17 and 19. The elytra are moderately large, oval, opaque and smooth, covering the anterior and posterior dorsal ends completely, but leaving the middle of the body just partially covered. Dorsal cirri with short cylindrical cirrophores present on non-elytra-bearing segments; short styles with slender tips, often extending to about tips of neurosetae, but with a few exceptions; Dorsal tubercles on cirrigerous segments indistinct

Etymology

named 'longqiensis' in reference to the collection site, the “Longqi” vent field on the SW Indian Ocean Ridge

Distribution

HOV Jiaolong Dive94, Longqi vent field, Southwest Indian Ocean Ridge, Southern Indian Ocean, 37.7839 S, 49.6502 E, 2761 m. Tiancheng and Wocan hydrothermal vent fields in the Indian Ocean (27.85 S 63.92 E)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Branchipolynoe longqiensisAnnelidascale wormCold seep2,705 or 2,970Tiancheng and Wocan hydrothermal vent fields in the Indian Ocean (27.85 S 63.92 E)2487007

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
ASM3032388v11.86GbChromosome2023JASIRB01Ocean University of ChinaPRJNA96192689.30 97,050/566.344.3571.1421,235

References
TitleJournalPubmed ID
Genomic Analysis of a Scale Worm Provides Insights into Its Adaptation to Deep-Sea Hydrothermal VentsGenome Biology and Evolution37401460

Gene Information

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Gene IDDescription
Blon|HiC_6G000117DEATH DOMAIN-CONTAINING PROTEIN CRADD
Blon|HiC_6G000118DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A
Blon|HiC_6G000119DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A
Blon|HiC_6G000120OSMOTIC AVOIDANCE ABNORMAL PROTEIN 1/WD REPEAT MEMBRANE PROTEIN
Blon|HiC_6G000121OSMOTIC AVOIDANCE ABNORMAL PROTEIN 1/WD REPEAT MEMBRANE PROTEIN
Blon|HiC_6G000122-
Blon|HiC_6G000123TRANSCRIPTION INITIATION FACTOR TFIID
Blon|HiC_6G000124TRANSCRIPTION INITIATION FACTOR TFIID
Blon|HiC_6G000125RAD50
Blon|HiC_6G000126-
Blon|HiC_6G000127SAP30
Blon|HiC_6G000128HIGH MOBILITY GROUP PROTEIN DSP1
Blon|HiC_6G000129-
Blon|HiC_6G000130RAN GTPASE-ACTIVATING PROTEIN 1
Blon|HiC_6G000131TBC1 DOMAIN FAMILY MEMBER 19
Blon|HiC_6G000132TBC1 DOMAIN FAMILY MEMBER 19
Blon|HiC_6G000133ANKYRIN REPEAT, SAM AND BASIC LEUCINE ZIPPER DOMAIN-CONTAINING PROTEIN 1
Blon|HiC_6G000134SYNAPTIC ADHESION-LIKE MOLECULE SALM
Blon|HiC_6G000135-
Blon|HiC_6G000136UNCHARACTERIZED

Results of comparison between Branchipolynoe longqiensis and its nearshore relatives from the paper (He et al., 2023)

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Annotation IDDescriptionTypeSubtypeGeneRatioEvolution TypeP-valueQ-value
GO:0042575DNA polymerase complexGOCellular Component26/350expanded5.99E-271.51E-25
GO:0005874microtubuleGOCellular Component34/350expanded3.04E-193.84E-18
GO:0005576extracellular regionGOCellular Component44/350expanded1.80E-151.51E-14
GO:0005576extracellular regionGOCellular Component53/1018contracted0.0001663340.002801415
GO:0030286dynein complexGOCellular Component13/350expanded5.36E-123.38E-11
GO:0045211postsynaptic membraneGOCellular Component13/350expanded1.57E-077.92E-07
GO:0005930axonemeGOCellular Component7/350expanded2.71E-079.79E-07
GO:00977299+2 motile ciliumGOCellular Component7/350expanded2.71E-079.79E-07
GO:0070161anchoring junctionGOCellular Component13/350expanded3.95E-061.25E-05
GO:0005635nuclear envelopeGOCellular Component6/350expanded8.26E-050.000231854
GO:0015630microtubule cytoskeletonGOCellular Component7/350expanded0.0002177810.000550183
GO:0098793presynapseGOCellular Component5/350expanded0.000353220.000811222
GO:0030016myofibrilGOCellular Component4/350expanded0.0004965930.00104546
GO:0015935small ribosomal subunitGOCellular Component4/350expanded0.0015315280.002976249
GO:0005925focal adhesionGOCellular Component3/350expanded0.0090493860.01493092
GO:0005764lysosomeGOCellular Component5/350expanded0.009456250.01493092
GO:0071944cell peripheryGOCellular Component5/350expanded0.009456250.01493092
GO:0043005neuron projectionGOCellular Component6/350expanded0.0149944030.022282705
GO:0005615extracellular spaceGOCellular Component7/350expanded0.0160371240.022508244
GO:0005615extracellular spaceGOCellular Component17/1018contracted0.0011328780.014310036
GO:0005765lysosomal membraneGOCellular Component4/350expanded0.0183213140.024360749
GO:0008234cysteine-type peptidase activityGOMolecular Function27/289expanded3.75E-191.42E-17
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