About Branchipolynoe longqiensis

Branchipolynoe longqiensis is a species of scale worm in the family Polynoidae, discovered in the Longqi hydrothermal vent field on the Southwest Indian Ridge. This species is distinguished by its biramous parapodia with reduced notopodia, stout notosetae, and branchiae with short terminal filaments. Adapted to extreme hydrothermal vent environments, Branchipolynoe longqiensis contributes to the unique biodiversity of these ecosystems and provides insights into the adaptations of organisms to high-temperature and chemically rich habitats.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Errantia (Subclass); Phyllodocida (Order); Aphroditiformia (Suborder); Polynoidae (Family); Macellicephalinae (Subfamily); Lepidonotopodini (Tribe); Branchipolynoe (Genus); Branchipolynoe longqiensis (Species)

Original Name

Branchipolynoe longqiensis Zhou, Zhang, Lu & Wang, 2017

Key Reference Paper

1. Zhou Y, Zhang D, Lu B, et al. Description of a new branchiate scale-worm (Polychaeta: Polynoidae) from the hydrothermal vent on Southwest Indian Ocean Ridge[J]. Zootaxa, 2017, 4282(1): 123-134. (Zhou et al., 2017)
2. He X, Wang H, Xu T, et al. Genomic analysis of a scale worm provides insights into its adaptation to deep-sea hydrothermal vents[J]. Genome Biology and Evolution, 2023, 15(7): evad125. (He et al., 2023)

Description

Body short, slightly tapered anteriorly and posteriorly, flattened ventrally and arched dorsally. 21 segments with 10 pairs of elytra and short elytrophores present on segments 2, 4, 5, 7, 9, 11, 13, 15, 17 and 19. The elytra are moderately large, oval, opaque and smooth, covering the anterior and posterior dorsal ends completely, but leaving the middle of the body just partially covered. Dorsal cirri with short cylindrical cirrophores present on non-elytra-bearing segments; short styles with slender tips, often extending to about tips of neurosetae, but with a few exceptions; Dorsal tubercles on cirrigerous segments indistinct

Etymology

named 'longqiensis' in reference to the collection site, the “Longqi” vent field on the SW Indian Ocean Ridge

Distribution

HOV Jiaolong Dive94, Longqi vent field, Southwest Indian Ocean Ridge, Southern Indian Ocean, 37.7839 S, 49.6502 E, 2761 m. Tiancheng and Wocan hydrothermal vent fields in the Indian Ocean (27.85 S 63.92 E)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Branchipolynoe longqiensisAnnelidascale wormCold seep2,705 or 2,970Tiancheng and Wocan hydrothermal vent fields in the Indian Ocean (27.85 S 63.92 E)2487007

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
ASM3032388v11.86GbChromosome2023JASIRB01Ocean University of ChinaPRJNA96192689.30 97,050/566.344.3571.1421,235

References
TitleJournalPubmed ID
Genomic Analysis of a Scale Worm Provides Insights into Its Adaptation to Deep-Sea Hydrothermal VentsGenome Biology and Evolution37401460

Gene Information

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Gene IDDescription
Blon|HiC_10G000001-
Blon|HiC_10G000002PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED
Blon|HiC_10G000003-
Blon|HiC_10G000004-
Blon|HiC_10G000005-
Blon|HiC_10G000006-
Blon|HiC_10G000007-
Blon|HiC_10G000008-
Blon|HiC_10G000009-
Blon|HiC_10G000010-
Blon|HiC_10G000011POTASSIUM CHANNEL, SUBFAMILY K
Blon|HiC_10G000012-
Blon|HiC_10G000013PROTEIN CBG11839-RELATED
Blon|HiC_10G000014-
Blon|HiC_10G000015-
Blon|HiC_10G000016-
Blon|HiC_10G000017POTASSIUM CHANNEL, SUBFAMILY K
Blon|HiC_10G000018TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED
Blon|HiC_10G000019SOLUTE CARRIER FAMILY 22 MEMBER
Blon|HiC_10G000020-

Results of comparison between Branchipolynoe longqiensis and its nearshore relatives from the paper (He et al., 2023)

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Annotation IDDescriptionTypeSubtypeGeneRatioEvolution TypeP-valueQ-value
GO:0003676nucleic acid bindingGOMolecular Function39/289expanded2.02E-173.83E-16
GO:0003887DNA-directed DNA polymerase activityGOMolecular Function11/289expanded1.18E-101.23E-09
GO:0005102signaling receptor bindingGOMolecular Function13/289expanded1.30E-101.23E-09
GO:0000062fatty-acyl-CoA bindingGOMolecular Function9/289expanded1.25E-099.47E-09
GO:0004867serine-type endopeptidase inhibitor activityGOMolecular Function10/289expanded2.21E-081.40E-07
GO:0043565sequence-specific DNA bindingGOMolecular Function8/289expanded3.78E-072.05E-06
GO:0022848acetylcholine-gated monoatomic cation-selective channel activityGOMolecular Function12/289expanded1.58E-067.48E-06
GO:0004519endonuclease activityGOMolecular Function8/289expanded1.05E-054.43E-05
GO:0030414peptidase inhibitor activityGOMolecular Function8/289expanded2.12E-058.04E-05
GO:0008236serine-type peptidase activityGOMolecular Function13/289expanded3.04E-050.000104831
GO:0004888transmembrane signaling receptor activityGOMolecular Function12/289expanded0.0001029250.000325027
GO:00001753-5-RNA exonuclease activityGOMolecular Function5/289expanded0.0001975290.000553909
GO:0008233peptidase activityGOMolecular Function23/289expanded0.0002046380.000553909
GO:0004252serine-type endopeptidase activityGOMolecular Function13/289expanded0.0002270720.000573655
GO:0003677DNA bindingGOMolecular Function10/289expanded0.0008007030.001896402
GO:0061630ubiquitin protein ligase activityGOMolecular Function8/289expanded0.0010833340.002414862
GO:0008270zinc ion bindingGOMolecular Function22/289expanded0.0024835520.005228529
GO:0015293symporter activityGOMolecular Function5/289expanded0.0107178420.02093201
GO:0015293symporter activityGOMolecular Function12/604contracted7.53E-066.79E-05
GO:0005509calcium ion bindingGOMolecular Function27/289expanded0.011047450.02093201
GO:0005509calcium ion bindingGOMolecular Function65/604contracted6.21E-077.84E-06
GO:0005216monoatomic ion channel activityGOMolecular Function3/289expanded0.0120986880.021832218
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