About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_003587-T1
LLU|FUN_003588-T1
LLU|FUN_003589-T1INTEGRIN ALPHA REPEAT DOMAIN-CONTAINING
LLU|FUN_003590-T1C2 DOMAIN-CONTAINING PROTEIN 5
LLU|FUN_003591-T1
LLU|FUN_003592-T1FORKHEAD BOX PROTEIN M1
LLU|FUN_003593-T1ZINC FINGER PROTEIN ZIC AND GLI
LLU|FUN_003595-T1TRANSMEMBRANE PROTEIN KIAA1109
LLU|FUN_003596-T1
LLU|FUN_003597-T1
LLU|FUN_003598-T1
LLU|FUN_003599-T1UNCHARACTERIZED
LLU|FUN_003600-T1
LLU|FUN_003601-T1SYNEMBRYN
LLU|FUN_003602-T1FORMIN-BINDING PROTEIN 4
LLU|FUN_003603-T1FORMIN-BINDING PROTEIN 4
LLU|FUN_003604-T1
LLU|FUN_003605-T1
LLU|FUN_003606-T1
LLU|FUN_003607-T1COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
LLU|FUN_003608-T1
LLU|FUN_003609-T1TRANSCRIPTION FACTOR-LIKE 5 PROTEIN
LLU|FUN_003610-T1
LLU|FUN_003611-T1
LLU|FUN_003612-T1
LLU|FUN_003613-T1
LLU|FUN_003614-T1
LLU|FUN_003615-T1IOJAP SUPERFAMILY ORTHOLOG
LLU|FUN_003616-T1-
LLU|FUN_003617-T1ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD
LLU|FUN_003618-T1FATTY ACID DESATURASE 2
LLU|FUN_003619-T1CYCLIN Y, ISOFORM A
LLU|FUN_003620-T1
LLU|FUN_003621-T1UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
LLU|FUN_003622-T1
LLU|FUN_003623-T1
LLU|FUN_003624-T1
LLU|FUN_003625-T1PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED
LLU|FUN_003626-T140S RIBOSOMAL PROTEIN S3A
LLU|FUN_003627-T1
LLU|FUN_003628-T1UBIQUITIN-LIKE PROTEIN 3 HCG-1 PROTEIN
LLU|FUN_003629-T1PROTEIN PHOSPHATASE METHYLESTERASE-1 RELATED
LLU|FUN_003630-T1
LLU|FUN_003631-T1
LLU|FUN_003632-T1TRANSFORMING GROWTH FACTOR ALPHA
LLU|FUN_003633-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
LLU|FUN_003634-T1OPSIN
LLU|FUN_003635-T1
LLU|FUN_003636-T1JITTERBUG, ISOFORM N
LLU|FUN_003637-T1SI:CH211-266K2.1
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