About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_003183-T1
LLU|FUN_003184-T1
LLU|FUN_003185-T1LONG-CHAIN-FATTY-ACID--COA LIGASE
LLU|FUN_003186-T1
LLU|FUN_003187-T1
LLU|FUN_003188-T1
LLU|FUN_003189-T1UNCHARACTERIZED
LLU|FUN_003190-T1
LLU|FUN_003191-T1ALPHA-1,2 MANNOSYLTRANSFERASE KTR1
LLU|FUN_003192-T1UNCHARACTERIZED
LLU|FUN_003193-T1TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE
LLU|FUN_003194-T1BAX INHIBITOR-RELATED
LLU|FUN_003195-T1
LLU|FUN_003196-T1GATA-TYPE ZINC FINGER PROTEIN 1
LLU|FUN_003197-T1GUANYLYL CYCLASE
LLU|FUN_003198-T1GUANYLYL CYCLASE
LLU|FUN_003199-T1
LLU|FUN_003200-T1RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
LLU|FUN_003201-T1
LLU|FUN_003202-T1
LLU|FUN_003203-T1
LLU|FUN_003204-T1
LLU|FUN_003205-T1
LLU|FUN_003206-T1VWFC DOMAIN-CONTAINING PROTEIN
LLU|FUN_003207-T1DNA POLYMERASE DELTA SUBUNIT 3
LLU|FUN_003208-T1
LLU|FUN_003209-T1WINGED HELIX DOMAIN-CONTAINING PROTEIN
LLU|FUN_003210-T1-
LLU|FUN_003211-T1
LLU|FUN_003212-T1
LLU|FUN_003213-T1GUANYL-NUCLEOTIDE EXCHANGE FACTOR
LLU|FUN_003214-T140S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11
LLU|FUN_003215-T1ZINC FINGER SWIM DOMAIN CONTAINING PROTEIN 4, 5, 6
LLU|FUN_003216-T1CASPASE
LLU|FUN_003217-T1CXC DOMAIN-CONTAINING PROTEIN-RELATED
LLU|FUN_003218-T1CXC DOMAIN-CONTAINING PROTEIN-RELATED
LLU|FUN_003219-T1
LLU|FUN_003220-T1
LLU|FUN_003221-T1
LLU|FUN_003222-T1LIPOPOLYSACCHARIDE CHOLINEPHOSPHOTRANSFERASE LICD
LLU|FUN_003223-T1
LLU|FUN_003224-T1
LLU|FUN_003225-T1MYOSIN LIGHT CHAIN 1, 3
LLU|FUN_003226-T1DELTEX-RELATED
LLU|FUN_003227-T1
LLU|FUN_003228-T1
LLU|FUN_003229-T1MITOCHONDRIA-EATING PROTEIN-RELATED
LLU|FUN_003230-T1
LLU|FUN_003231-T1
LLU|FUN_003232-T1
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