About Lamellibrachia satsuma

Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Lamellibrachia (Genus); Lamellibrachia satsuma (Species)

Original Name

Lamellibrachia satsuma Miura, 1997

Key Reference Paper

1. Miura T. Lamellibrachia satsuma, a new species of vestimentiferan worms (Annelida: Pogonophora) from a shallow hydrothermal vent in Kagoshima Bay, Japan[J]. Proceedings of the Biological Society of Washington, 1997, 110: 447-456. (Miura et al., 1997)

Distribution

The species has been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m (3,840 ft) depth.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia satsumaAnnelidatube wormsCold seep110Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE)104711

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
ASM3323900v1736MbScaffold2023BSQZ01Atmosphere and Ocean Research Institute, The University of TokyoPRJDB1419995.50 8,074/6,60040.2-27,979

References
TitleJournalPubmed ID
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsumaDNA Research37358253

Gene Information

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Gene IDDescription
Lsat_s019.g0102.t1PROTEIN DISULFIDE-ISOMERASE TMX3
Lsat_s019.g0103.t1COILED-COIL DOMAIN-CONTAINING PROTEIN 102A
Lsat_s019.g0104.t1KRAB AND ZINC FINGER DOMAIN-CONTAINING
Lsat_s019.g0105.t1PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B
Lsat_s019.g0106.t1PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B
Lsat_s019.g0107.t1-
Lsat_s019.g0108.t1-
Lsat_s019.g0109.t1ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 18
Lsat_s019.g0110.t1RNA RECOGNITION MOTIF-CONTAINING
Lsat_s019.g0111.t1-
Lsat_s019.g0112.t1EGF-LIKE DOMAIN-CONTAINING PROTEIN
Lsat_s019.g0113.t1-
Lsat_s019.g0114.t1LISH DOMAIN-CONTAINING PROTEIN ARMC9
Lsat_s019.g0115.t1UNCHARACTERIZED
Lsat_s019.g0116.t1ALANINE AMINOTRANSFERASE
Lsat_s019.g0117.t1N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE
Lsat_s019.g0118.t1MDM2-BINDING PROTEIN
Lsat_s019.g0119.t1BETA-CATENIN-LIKE PROTEIN 1 NUCLEAR ASSOCIATED PROTEIN
Lsat_s019.g0120.t1LYSINE-SPECIFIC DEMETHYLASE
Lsat_s019.g0121.t1GPI TRANSAMIDASE COMPONENT PIG-T-RELATED
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