Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_5538-13.6 | |
| Bpl_scaf_5538-14.16 | SIDEROFLEXIN |
| Bpl_scaf_5538-15.5 | HEDGEHOG-INTERACTING PROTEIN |
| Bpl_scaf_5538-15.6 | IONOTROPIC GLUTAMATE RECEPTOR |
| Bpl_scaf_5538-16.11 | PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED |
| Bpl_scaf_5538-16.25 | ATP-DEPENDENT RNA HELICASE |
| Bpl_scaf_5538-16.26 | ARSENITE METHYLTRANSFERASE |
| Bpl_scaf_5538-16.27 | PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED |
| Bpl_scaf_5538-17.3 | CELL DIVISION CYCLE ASSOCIATED PROTEIN 4/SERTA DOMAIN-CONTAINING PROTEIN 2 |
| Bpl_scaf_5538-17.6 | RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN |
| Bpl_scaf_5538-17.8 | ZYGIN |
| Bpl_scaf_5538-18.4 | CATION TRANSPORT PROTEIN CHAC-RELATED |
| Bpl_scaf_5538-18.5 | HELICASE SRCAP-RELATED |
| Bpl_scaf_5538-19.6 | CRUMBS FAMILY MEMBER |
| Bpl_scaf_5538-2.14 | DEATH DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_5538-2.8 | SERINE/THREONINE-PROTEIN KINASE 17 |
| Bpl_scaf_5538-21.3 | |
| Bpl_scaf_5538-21.4 | |
| Bpl_scaf_5538-22.3 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
| Bpl_scaf_5538-23.1 | CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 19 |
| Bpl_scaf_5538-24.1 | |
| Bpl_scaf_5538-25.39 | |
| Bpl_scaf_5538-25.40 | NISCHARIN RELATED |
| Bpl_scaf_5538-25.43 | CHITINASE |
| Bpl_scaf_5538-26.16 | DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED |
| Bpl_scaf_5538-26.6 | EXPORTIN 1/5 |
| Bpl_scaf_5538-26.8 | HOMEOBOX PROTEIN PROSPERO/PROX-1/CEH-26 |
| Bpl_scaf_5538-3.11 | |
| Bpl_scaf_5538-3.16 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
| Bpl_scaf_5538-3.8 | VERY-LONG-CHAIN (3R)-3-HYDROXYACYL-COA DEHYDRATASE |
| Bpl_scaf_5538-4.10 | TROPOMYOSIN |
| Bpl_scaf_5538-5.3 | |
| Bpl_scaf_5538-5.4 | 60S RIBOSOMAL PROTEIN L17 |
| Bpl_scaf_5538-6.7 | |
| Bpl_scaf_5538-6.8 | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE DSOR1-LIKE PROTEIN |
| Bpl_scaf_5538-6.9 | ARL14 EFFECTOR PROTEIN |
| Bpl_scaf_5538-7.4 | SOLUTE CARRIER FAMILY 22 MEMBER |
| Bpl_scaf_5538-8.10 | |
| Bpl_scaf_5538-8.5 | NEUROTRANSMITTER GATED ION CHANNEL |
| Bpl_scaf_5538-8.6 | E3 UBIQUITIN-PROTEIN LIGASE MARCH 2/3 FAMILY MEMBER |
| Bpl_scaf_5538-9.0 | TYROSINE-PROTEIN KINASE RECEPTOR |
| Bpl_scaf_55384-0.0 | GROWTH HORMONE-INDUCIBLE SOLUBLE PROTEIN-RELATED |
| Bpl_scaf_55384-0.2 | |
| Bpl_scaf_55384-0.5 | TRANSMEMBRANE PROTEIN 101 |
| Bpl_scaf_55384-0.7 | GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE |
| Bpl_scaf_5539-1.24 | CHITINASE |
| Bpl_scaf_5539-1.27 | P25 ALPHA-RELATED |
| Bpl_scaf_5539-1.28 | SIGNAL RECOGNITION PARTICLE 68 KDA PROTEIN |
| Bpl_scaf_5539-1.58 | CHITINASE |
| Bpl_scaf_55394-0.0 |
