About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_55333-5.10
Bpl_scaf_55333-5.11
Bpl_scaf_55333-5.12
Bpl_scaf_55333-5.17ATP-DEPENDENT DNA HELICASE
Bpl_scaf_55333-5.19CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18
Bpl_scaf_55333-5.20CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18
Bpl_scaf_55333-5.24
Bpl_scaf_55334-0.2
Bpl_scaf_55342-0.15UNCHARACTERIZED
Bpl_scaf_55342-0.18
Bpl_scaf_55342-0.8TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED
Bpl_scaf_55342-0.9
Bpl_scaf_55346-0.8
Bpl_scaf_55355-0.7DENTIN MATRIX PROTEIN 4 PROTEIN FAM20
Bpl_scaf_55356-0.2
Bpl_scaf_55356-1.0
Bpl_scaf_55356-1.2COLLAGEN ALPHA
Bpl_scaf_55356-1.29
Bpl_scaf_55356-1.4COLLAGEN ALPHA
Bpl_scaf_55356-3.16
Bpl_scaf_55356-3.17CONNECTIVE TISSUE GROWTH FACTOR-RELATED
Bpl_scaf_55356-3.18COLLAGEN ALPHA
Bpl_scaf_55356-3.29RIBONUCLEASE
Bpl_scaf_55356-4.0PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED
Bpl_scaf_55356-4.9UNCHARACTERIZED
Bpl_scaf_55356-5.17
Bpl_scaf_55356-5.31
Bpl_scaf_55356-5.4
Bpl_scaf_55356-5.5
Bpl_scaf_55356-5.7
Bpl_scaf_55357-0.0
Bpl_scaf_55363-0.0
Bpl_scaf_55363-0.7
Bpl_scaf_5537-0.0LIPOATE-PROTEIN LIGASE
Bpl_scaf_5537-0.11COILED-COIL DOMAIN-CONTAINING PROTEIN 43
Bpl_scaf_5537-1.4NUCLEAR SEGREGATION PROTEIN BFR1
Bpl_scaf_5537-1.5SCC1 / RAD21 FAMILY MEMBER
Bpl_scaf_5537-2.16
Bpl_scaf_5537-2.17FLAVIN MONOAMINE OXIDASE
Bpl_scaf_5537-2.24
Bpl_scaf_5537-2.6CBP/P300-RELATED
Bpl_scaf_5538-0.1
Bpl_scaf_5538-0.6PHOSPHOACETYLGLUCOSAMINE MUTASE
Bpl_scaf_5538-0.7UBIQUITIN THIOESTERASE
Bpl_scaf_5538-1.2TRANSFORMING ACIDIC COILED-COIL CONTAINING PROTEIN 1/2
Bpl_scaf_5538-11.10
Bpl_scaf_5538-11.2NEUROTRANSMITTER GATED ION CHANNEL
Bpl_scaf_5538-11.8AQUAPORIN OR AQUAGLYCEROPORIN RELATED
Bpl_scaf_5538-12.3MUCOSA ASSOCIATED LYMPHOID TISSUE LYMPHOMA TRANSLOCATION PROTEIN 1/PARACASPASE
Bpl_scaf_5538-13.1NEUROTRANSMITTER GATED ION CHANNEL
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