About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS22401
HS22402
HS22403DNA POLYMERASE
HS22404ZINC FINGER AND SCAN DOMAIN-CONTAINING
HS22405PR DOMAIN ZINC FINGER PROTEIN
HS22406ODD-SKIPPED - RELATED
HS22407PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
HS22408
HS22409NUCLEAR GTPASE SLIP-GC
HS22410
HS22411PIKACHURIN-LIKE PROTEIN
HS22412INTERLEUKIN-1 RECEPTOR FAMILY MEMBER
HS22413INTERLEUKIN-1 RECEPTOR FAMILY MEMBER
HS22414
HS22415CADHERIN-87A
HS22416B-BOX DOMAIN CONTAINING
HS22417
HS22418SODIUM/CALCIUM EXCHANGER
HS224193-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE
HS22420PRESENILIN
HS22421DPY30-RELATED
HS22422
HS22423
HS22424ELL-ASSOCIATED FACTOR EAF
HS22425FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED
HS22426KRUEPPEL-LIKE TRANSCRIPTION FACTOR
HS22427CYCLIC NUCLEOTIDE PHOSPHODIESTERASE
HS22428TAF9 RNA POLYMERASE II, TATA BOX-BINDING PROTEIN (TBP)-ASSOCIATED FACTOR
HS22429HOMEOBOX PROTEIN CDX
HS22430HISTONE H4
HS22431HISTONE H2A
HS22432UNCHARACTERIZED
HS22433CHAPERONIN
HS22434
HS22435UNCHARACTERIZED
HS22436EXPORTIN 1/5
HS22437
HS22438
HS22439ADAPTIN, ALPHA/GAMMA/EPSILON
HS22440PROTEIN ARGININE N-METHYLTRANSFERASE
HS22441GLYCOGEN DEBRANCHING ENZYME
HS22442ALCOHOL DEHYDROGENASE
HS22443ZINC FINGER AND BTB DOMAIN-CONTAINING
HS22444MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN
HS22445CASEIN KINASE-RELATED
HS22446
HS22447MITOCHONDRIAL RIBOSOMAL PROTEIN L37
HS22448METHYLTRANSFERASE
HS22449LIM DOMAIN KINASE 1
HS22450NACHT, LRR AND CARD DOMAINS-CONTAINING
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