About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS22151CLAUDIN
HS22152ARRESTIN
HS22153EMILIN ELASTIN MICROFIBRIL INTERFACE-LOCATED PROTEIN ELASTIN MICROFIBRIL INTERFACER
HS22154COLLAGEN
HS22155COAGULATION FACTOR
HS22156IP21249P
HS22157DEUBIQUITINATING PROTEIN VCIP135
HS22158UNCHARACTERIZED
HS22159PROHIBITIN
HS22160
HS22161DISCS LARGE
HS22162RAS GTPASE-ACTIVATING PROTEINS
HS22163
HS22164NETRIN/LAMININ-RELATED
HS22165DUF853 DOMAIN-CONTAINING PROTEIN
HS22166ARMADILLO REPEAT-CONTAINING PROTEIN 1
HS22167
HS22168SMG-7 SUPPRESSOR WITH MORPHOLOGICAL EFFECT ON GENITALIA PROTEIN 7
HS22169NICOTINAMIDE MONONUCLEOTIDE ADENYLYLTRANSFERASE
HS22170NETRIN/LAMININ-RELATED
HS22171ATP-DEPENDENT RNA HELICASE
HS22172
HS22173WD40 REPEAT PROTEIN
HS22174WD40 REPEAT PROTEIN
HS22175UNCHARACTERIZED
HS22176PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR PEX5
HS22177
HS22178ANION EXCHANGE PROTEIN
HS22179DNAJ HOMOLOG SUBFAMILY C MEMBER 5 HOMOLOG
HS22180E3 UBIQUITIN-PROTEIN LIGASE TRIM
HS22181CORTICOLIBERIN/UROCORTIN
HS22182
HS22183
HS22184AMPHIPHYSIN
HS22185
HS22186DNAJ HOMOLOG SUBFAMILY C MEMBER 1
HS22187
HS22188UNCHARACTERIZED DUF1308
HS22189INOSITOL MONOPHOSPHATASE
HS22190SERINE/THREONINE-PROTEIN KINASE RIO1
HS22191RIBONUCLEASE P PROTEIN SUBUNIT P40
HS22192-
HS22193PROTEIN CBG11839-RELATED
HS22194ZINC FINGER PROTEIN
HS22195KELCH PROTEIN
HS22196ATP-DEPENDENT PROTEASE
HS22197
HS22198
HS22199B-BOX DOMAIN CONTAINING
HS22200E3 UBIQUITIN-PROTEIN LIGASE TRIM
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