About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS21851NUCLEOREDOXIN-LIKE PROTEIN 1
HS21852PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBER
HS21853LONG-CHAIN FATTY ACID TRANSPORT PROTEIN
HS21854ADHESION G-PROTEIN COUPLED RECEPTOR
HS21855CONTACTIN 5
HS21856HOMEOBOX PROTEIN TRANSCRIPTION FACTORS
HS21857MULTIVESICULAR BODY SUBUNIT 12A
HS21858BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR
HS21859TRANSMEMBRANE GTPASE FZO
HS21860ADENYLATE CYCLASE TYPE 1
HS21861CBP/P300-RELATED
HS21862BTB POZ DOMAIN CONTAINING 12
HS21863
HS21864GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE 1
HS21865UNCHARACTERIZED
HS21866
HS21867
HS21868XAA-PRO AMINOPEPTIDASE 1
HS21869AGAP001623-PA
HS21870EPM2A-INTERACTING PROTEIN 1
HS21871SI:CH211-196P9.1-RELATED
HS21872ADDUCIN
HS21873
HS21874MAX DIMERIZATION, MAD
HS21875REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS21876DUAL SPECIFICITY PROTEIN PHOSPHATASE
HS21877STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3
HS21878MATRIN 3/NUCLEAR PROTEIN 220-RELATED
HS21879PROGRAMMED CELL DEATH 4
HS21880BBSOME-INTERACTING PROTEIN 1
HS21881-
HS21882ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
HS21883MAMMALIAN EPENDYMIN-RELATED PROTEIN 1
HS21884NEUROPATHY TARGET ESTERASE/SWISS CHEESE D.MELANOGASTER
HS21885ATP SYNTHASE SUBUNIT D, MITOCHONDRIAL
HS21886HOMEOBOX PROTEIN MSX
HS21887NEURONAL VESICLE TRAFFICKING-ASSOCIATED PROTEIN 2-RELATED
HS21888HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
HS21889NON-SMC ELEMENT 1-RELATED
HS21890VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 37
HS21891EF HAND DOMAIN FAMILY A1,A2-RELATED
HS21892FIBROBLAST GROWTH FACTOR
HS21893IMPORTIN ALPHA
HS21894DNA REPAIR PROTEIN COMPLEMENTING XP-A CELLS
HS21895N-ACETYLNEURAMINATE SYNTHASE
HS21896CLATHRIN LIGHT CHAIN
HS21897ROK (REPRESSOR, ORF, KINASE) FAMILY
HS21898COMPLEXIN
HS21899TROPOMODULIN
HS21900TUDOR DOMAIN CONTAINING PROTEIN
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