About Bathynomus jamesi

Bathynomus jamesi is widely distributed across different environments including the deep-sea and as such are a useful model for studying adaptation, migration, and speciation. They have larger body size than their shallow water relatives and have large stomachs and fat bodies presumably to store organic reserves. To adapt to the benthic environment, they adopt a burrowing behavior . They have developed an oversized stomach, which can take approximately 2/3 of the whole body cavity when it fills up with food. In addition, they are well known for their extremely long fasting state, which should be the longest record to date. Larger animals usually have greater absolute energy requirements.

Classification

Animalia (Kingdom); Arthropoda (Phylum); Crustacea (Subphylum); Multicrustacea (Superclass); Malacostraca (Class); Eumalacostraca (Subclass); Peracarida (Superorder); Isopoda (Order); Cymothoida (Suborder); Cymothooidea (Superfamily); Cirolanidae (Family); Bathynomus (Genus); Bathynomus jamesi (Species)

Original Name

Bathynomus jamesi Kou, Chen & Li in Kou, Q., Chen, J., Li, X., He, L. & Wang, Y., 2017

Key Reference Paper

1. Kou Q, Chen J, Li X, et al. New species of the giant deep‐sea isopod genus Bathynomus (Crustacea, Isopoda, Cirolanidae) from Hainan Island, South China Sea[J]. Integrative zoology, 2017, 12(4): 283-291. (Kou et al., 2017)
2. Huang M C, Kawai T, Bruce N L. A new species of Bathynomus Milne-Edwards, 1879 (Isopoda: Cirolanidae) from the southern Gulf of Mexico with a redescription of Bathynomus jamesi Kou, Chen and Li, 2017 from off Pratas Island, Taiwan[J]. Journal of Natural History, 2022, 56(13-16): 885-921. (Huang et al., 2022)

Description

Holotype, 1 immature female (to-tal length [TL] 114 mm). Pleotelson with 11 or 13 short, straightspines; central spine not bifid. Uropod with endopodand exopod distolateral corner slightly produced. Cly-peus lateral margins concave, narrowly rounded apical-ly. Antennal flagellum extending to within pereonite 3. Body suboval, total length(114 mm) approximately 2.2 times as long as maximalwidth (53 mm)

Etymology

The species is named after Dr James K.Lowry in recognition of his great contribution to thecrustacean taxonomy

Distribution

Gulf of Aden, north-western IndianOcean and northern South China Sea, western PacificOcean at a depth of 563–898 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Bathynomus jamesiArthropoda-Hydrothermal vent898near Hainan Island, in the northern South China Sea (17° 46.845′ N, 110° 38.217′ E)1955234

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
ASM2301448v15.89GbContig2022JAJOZX01Institute of Oceanology, Chinese Academy of SciencesPRJNA77607694.80 586.537.2885.3223,221

References
TitleJournalPubmed ID
Genome of a giant isopod, Bathynomus jamesi, provides insights into body size evolution and adaptation to deep-sea environmentBMC Biology35562825

Gene Information

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Gene IDDescription
mRNA.BJAM.scaffold2394.11261CXC DOMAIN-CONTAINING PROTEIN-RELATED
mRNA.BJAM.scaffold2394.11262PEPTIDYL-TRNA HYDROLASE 2
mRNA.BJAM.scaffold2394.11263LEISHMANOLYSIN-LIKE PEPTIDASE
mRNA.BJAM.scaffold2394.11264STRUCTURAL CONTITUENT OF CUTICLE
mRNA.BJAM.scaffold2394.11265STRUCTURAL CONTITUENT OF CUTICLE
mRNA.BJAM.scaffold2394.11266STRUCTURAL CONTITUENT OF CUTICLE
mRNA.BJAM.scaffold2395.11267-
mRNA.BJAM.scaffold2395.11268E3 UBIQUITIN-PROTEIN LIGASE MIB2
mRNA.BJAM.scaffold2395.11269E3 UBIQUITIN-PROTEIN LIGASE MIB2
mRNA.BJAM.scaffold2396.11270CYTOCHROME C OXIDASE SUBUNIT 5B, MITOCHONDRIAL
mRNA.BJAM.scaffold2396.11271SOLUBLE NSF ATTACHMENT PROTEIN SNAP
mRNA.BJAM.scaffold2397.11272ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE ALKB HOMOLOG 6
mRNA.BJAM.scaffold2397.11273BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
mRNA.BJAM.scaffold2398.11274MEMBRANE-ASSOCIATED PROGESTERONE RECEPTOR COMPONENT-RELATED
mRNA.BJAM.scaffold2398.11275CENTROSOMAL PROTEIN OF 290 KDA
mRNA.BJAM.scaffold2398.11276CENTROSOMAL PROTEIN OF 290 KDA
mRNA.BJAM.scaffold2398.11277MYOGENIC FACTOR
mRNA.BJAM.scaffold2398.112785-HYDROXYTRYPTAMINE RECEPTOR
mRNA.BJAM.scaffold2399.11279IROQUOIS-CLASS HOMEODOMAIN PROTEIN IRX
mRNA.BJAM.scaffold2399.11280-
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