Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2192153.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| KAK2192154.1 | |
| KAK2192155.1 | |
| KAK2192156.1 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| KAK2192157.1 | |
| KAK2192158.1 | |
| KAK2192159.1 | |
| KAK2192160.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| KAK2192161.1 | AUTOCRINE PROLIFERATION REPRESSOR PROTEIN A |
| KAK2192162.1 | |
| KAK2192163.1 | |
| KAK2192164.1 | AUTOCRINE PROLIFERATION REPRESSOR PROTEIN A |
| KAK2192165.1 | AUTOCRINE PROLIFERATION REPRESSOR PROTEIN A |
| KAK2192166.1 | AUTOCRINE PROLIFERATION REPRESSOR PROTEIN A |
| KAK2192167.1 | AUTOCRINE PROLIFERATION REPRESSOR PROTEIN A |
| KAK2192168.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 17 |
| KAK2192169.1 | ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER |
| KAK2192170.1 | |
| KAK2192171.1 | |
| KAK2192172.1 | |
| KAK2192173.1 | PHOSPHOLIPID ACYLTRANSFERASE |
| KAK2192174.1 | |
| KAK2192175.1 | |
| KAK2192176.1 | |
| KAK2192177.1 | |
| KAK2192178.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2192179.1 | |
| KAK2192180.1 | TTC17 PROTEIN |
| KAK2192181.1 | INACTIVE POLYGLYCYLASE TTLL10 |
| KAK2192182.1 | |
| KAK2192183.1 | RAS-RESPONSIVE ELEMENT-BINDING PROTEIN 1 |
| KAK2192184.1 | |
| KAK2192185.1 | NF-KAPPA-B INHIBITOR-INTERACTING RAS-LIKE PROTEIN |
| KAK2192186.1 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
| KAK2192187.1 | UNCHARACTERIZED |
| KAK2192188.1 | DYSTROBREVIN BINDING PROTEIN 1 DYSBINDIN |
| KAK2192189.1 | PROTEIN CBG05349 |
| KAK2192190.1 | PHENYLALANYL-TRNA SYNTHETASE |
| KAK2192191.1 | |
| KAK2192192.1 | CADHERIN-23 |
| KAK2192193.1 | CADHERIN-23 |
| KAK2192194.1 | |
| KAK2192196.1 | CADHERIN-23 |
| KAK2192195.1 | |
| KAK2192197.1 | UPF0183 PROTEIN |
| KAK2192198.1 | TUBULIN POLYGLUTAMYLASE |
| KAK2192199.1 | RE40534P-RELATED |
| KAK2192200.1 | FATTY ACID HYDROXYLASE |
| KAK2192201.1 | FATTY ACID HYDROXYLASE |
| KAK2192202.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
