Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2192043.1 | ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1 |
| KAK2192044.1 | ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1 |
| KAK2192045.1 | |
| KAK2192046.1 | |
| KAK2192047.1 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| KAK2192048.1 | ER LUMEN PROTEIN RETAINING RECEPTOR |
| KAK2192049.1 | GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2 |
| KAK2192050.1 | |
| KAK2192051.1 | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING |
| KAK2192052.1 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
| KAK2192053.1 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
| KAK2192054.1 | GLYCOPROTEIN HORMONE RECEPTOR |
| KAK2192055.1 | VOLTAGE-DEPENDENT CALCIUM CHANNEL GAMMA SUBUNIT |
| KAK2192056.1 | MYOSIN LIGHT CHAIN 1, 3 |
| KAK2192057.1 | UNCHARACTERIZED |
| KAK2192058.1 | UNCHARACTERIZED |
| KAK2192059.1 | GLUTATHIONE S-TRANSFERASE |
| KAK2192060.1 | BLUE CHEESE |
| KAK2192061.1 | |
| KAK2192062.1 | BLUE CHEESE |
| KAK2192063.1 | BLUE CHEESE |
| KAK2192064.1 | BLUE CHEESE |
| KAK2192065.1 | BLUE CHEESE |
| KAK2192066.1 | AB HYDROLASE SUPERFAMILY PROTEIN C4A8.06C |
| KAK2192067.1 | CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2 |
| KAK2192068.1 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| KAK2192069.1 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| KAK2191969.1 | - |
| KAK2191970.1 | - |
| KAK2191971.1 | |
| KAK2191972.1 | |
| KAK2191973.1 | |
| KAK2191974.1 | BUCENTAUR RELATED |
| KAK2191975.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2191976.1 | |
| KAK2191977.1 | |
| KAK2191978.1 | - |
| KAK2191979.1 | |
| KAK2191980.1 | |
| KAK2191981.1 | |
| KAK2191982.1 | SPRY DOMAIN CONTAINING SOCS BOX PROTEIN |
| KAK2191983.1 | ELONGATOR COMPLEX PROTEIN 6 |
| KAK2191984.1 | |
| KAK2191985.1 | LD22376P |
| KAK2191986.1 | 2-OXOGLUTARATE DEHYDROGENASE |
| KAK2191987.1 | UPF0728 PROTEIN C10ORF53 |
| KAK2191988.1 | |
| KAK2191989.1 | |
| KAK2191990.1 | |
| KAK2191991.1 | ATAXIN 2-BINDING PROTEIN 1-RELATED |
