Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2192334.1 | UPSTREAM BINDING TRANSCRIPTION FACTOR |
| KAK2192335.1 | IONOTROPIC GLUTAMATE RECEPTOR |
| KAK2192336.1 | FI01416P |
| KAK2192337.1 | FLAVIN MONOAMINE OXIDASE |
| KAK2192338.1 | BIOGENESIS OF LYSOSOME-RELATED ORGANELLES COMPLEX 1 SUBUNIT 5 |
| KAK2192339.1 | REGULATING SYNAPTIC MEMBRANE EXOCYTOSIS PROTEIN |
| KAK2192340.1 | REGULATING SYNAPTIC MEMBRANE EXOCYTOSIS PROTEIN |
| KAK2192341.1 | |
| KAK2192342.1 | ZINC FINGER PROTEIN |
| KAK2192343.1 | RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER |
| KAK2192344.1 | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KD PROTEIN |
| KAK2192345.1 | PHOSPHATIDYLINOSITOL KINASE |
| KAK2192346.1 | HCLS1-BINDING PROTEIN 3 |
| KAK2192347.1 | ZINC FINGER AND SCAN DOMAIN-CONTAINING |
| KAK2192348.1 | DESTABILASE-RELATED |
| KAK2192349.1 | |
| KAK2192350.1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
| KAK2192351.1 | |
| KAK2192352.1 | |
| KAK2192353.1 | |
| KAK2192302.1 | REGULATOR OF G-PROTEIN SIGNALING 3 |
| KAK2192303.1 | REGULATOR OF G-PROTEIN SIGNALING 3 |
| KAK2192304.1 | REGULATOR OF G-PROTEIN SIGNALING 3 |
| KAK2192305.1 | REGULATOR OF G-PROTEIN SIGNALING 3 |
| KAK2192306.1 | |
| KAK2192307.1 | REGULATOR OF G-PROTEIN SIGNALING 3 |
| KAK2192308.1 | |
| KAK2192309.1 | ADP-RIBOSYLGLYCOHYDROLASE |
| KAK2192310.1 | PROTEIN CBG26694 |
| KAK2192311.1 | |
| KAK2192312.1 | 60S RIBOSOMAL PROTEIN L35 |
| KAK2192313.1 | ARP2/3 COMPLEX 16 KD SUBUNIT P16-ARC |
| KAK2192314.1 | RAS GTPASE-RELATED |
| KAK2192315.1 | DENN DOMAIN-CONTAINING |
| KAK2192316.1 | |
| KAK2192317.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2192318.1 | PROTEASE FAMILY S9B,C DIPEPTIDYL-PEPTIDASE IV-RELATED |
| KAK2192319.1 | PROTEASE FAMILY S9B,C DIPEPTIDYL-PEPTIDASE IV-RELATED |
| KAK2192320.1 | UNCHARACTERIZED |
| KAK2192321.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2192322.1 | |
| KAK2192323.1 | MITOCHONDRIAL RIBOSOMAL PROTEIN L37 |
| KAK2192258.1 | DEOXYNUCLEOSIDE KINASE |
| KAK2192259.1 | RIBOSOMAL PROTEIN S7 |
| KAK2192260.1 | POTE ANKYRIN DOMAIN |
| KAK2192261.1 | RUN AND FYVE DOMAIN-CONTAINING PROTEIN 2-LIKE PROTEIN |
| KAK2192262.1 | RUN AND FYVE DOMAIN-CONTAINING PROTEIN 2-LIKE PROTEIN |
| KAK2192263.1 | BETA TRANSDUCIN-RELATED PROTEIN |
| KAK2192264.1 | WD40 REPEAT PF20 |
| KAK2192265.1 |
