Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2192483.1 | ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER |
| KAK2192484.1 | L-CYSTEINE DESULFHYDRASE |
| KAK2192485.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED |
| KAK2192486.1 | BIOGENESIS OF LYSOSOME-RELATED ORGANELLES COMPLEX 1 SUBUNIT 3 |
| KAK2192487.1 | NUCLEAR INHIBITOR OF PROTEIN PHOSPHATASE-1 |
| KAK2192488.1 | 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE |
| KAK2192489.1 | POU DOMAIN |
| KAK2192490.1 | |
| KAK2192491.1 | |
| KAK2192492.1 | |
| KAK2192493.1 | |
| KAK2192494.1 | U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 11 |
| KAK2192495.1 | U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 11 |
| KAK2192496.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2192497.1 | RIBOSOMAL PROTEIN S9 |
| KAK2192498.1 | |
| KAK2192499.1 | T-CELL ACTIVATION RHO GTPASE ACTIVATING PROTEIN-RELATED |
| KAK2192500.1 | CLATHRIN ASSEMBLY PROTEIN |
| KAK2192501.1 | CLATHRIN ASSEMBLY PROTEIN |
| KAK2192502.1 | |
| KAK2192503.1 | |
| KAK2192504.1 | |
| KAK2192505.1 | |
| KAK2192506.1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
| KAK2192507.1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
| KAK2192420.1 | |
| KAK2192421.1 | |
| KAK2192422.1 | MONOCARBOXYLATE TRANSPORTER |
| KAK2192423.1 | AUTOCRINE PROLIFERATION REPRESSOR PROTEIN A |
| KAK2192424.1 | ATILLA, ISOFORM B-RELATED-RELATED |
| KAK2192425.1 | ATILLA, ISOFORM B-RELATED-RELATED |
| KAK2192426.1 | NEUROTRANSMITTER GATED ION CHANNEL |
| KAK2192427.1 | NEUROTRANSMITTER GATED ION CHANNEL |
| KAK2192428.1 | NEUROTRANSMITTER GATED ION CHANNEL |
| KAK2192429.1 | NEUROTRANSMITTER GATED ION CHANNEL |
| KAK2192430.1 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| KAK2192431.1 | |
| KAK2192432.1 | NEUROTRANSMITTER GATED ION CHANNEL |
| KAK2192433.1 | FMRFAMIDE RECEPTOR-RELATED |
| KAK2192434.1 | CDK-ACTIVATING KINASE ASSEMBLY FACTOR MAT1 |
| KAK2192435.1 | TRNA METHYLTRANSFERASE |
| KAK2192436.1 | COFILIN-RELATED |
| KAK2192437.1 | IRON-SULFUR CLUSTER ASSEMBLY 2 HOMOLOG, MITOCHONDRIAL |
| KAK2192438.1 | |
| KAK2192439.1 | 3-HYDROXYACYL-COA DEHYDROGENASE FAMILY PROTEIN |
| KAK2192440.1 | PERIAXIN/AHNAK |
| KAK2192441.1 | |
| KAK2192442.1 | INTELECTIN |
| KAK2192443.1 | |
| KAK2192444.1 | PROTEIN PHOSPATASE 3 REGULATORY SUBUNIT B ALPHA ISOFORM TYPE 1 |
