About Ridgeia piscesae

Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Ridgeia (Genus); Ridgeia piscesae (Species)

Original Name

Ridgeia piscesae Jones, 1985

Key Reference Paper

1. Jones M L. On the Vestimentifera, new phylum: six new species, and other taxa, from hydrothermal vents and elsewhere[J]. Bull Biol Soc Wash, 1985, 6: 117. (Jones et al., 1985)
2. Southward E C, Tunnicliffe V, Black M. Revision of the species of Ridgeia from northeast Pacific hydrothermal vents, with a redescription of Ridgeia piscesae Jones (Pogonophora: Obturata= Vestimentifera)[J]. Canadian Journal of zoology, 1995, 73(2): 282-295. (Southward et al., 1995)

Distribution

Shepherd's Vent, Axial Seamount, Juande Fuca Ridge. Hydrothermal vents of Juan de Fuca Ridgeand northern Gorda Ridge


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Ridgeia piscesaeAnnelidatube wormsHydrothermal vent1,780-2,227the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W)27915

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
R07B-5658.2MbContig2022JAODUO01Universite de MontrealPRJNA78643894.00 365.441-31,703

References
TitleJournalPubmed ID
Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea PolychaetesMolecular Biology and Evolution37494294

Gene Information

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Gene IDDescription
KAK2193551.1-
KAK2193552.1ANOCTAMIN
KAK2193553.1ANOCTAMIN
KAK2193554.1ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED
KAK2193555.1HCLS1-ASSOCIATED PROTEIN X-1
KAK2193556.1GAMMA TUBULIN COMPLEX PROTEIN
KAK2193557.1DNA2/NAM7 HELICASE FAMILY
KAK2193558.1-
KAK2193559.1POLY A POLYMERASE CID PAP -RELATED
KAK2193560.1TUMOR SUPPRESSOR P53-BINDING PROTEIN 1
KAK2193561.1-
KAK2193562.140S RIBOSOMAL PROTEIN S6
KAK2193563.1ANKYRIN REPEAT CONTAINING
KAK2193564.1NUCLEAR HORMONE RECEPTOR
KAK2193565.1SERUM RESPONSE FACTOR HOMOLOG
KAK2193451.1-
KAK2193452.1SOLUTE CARRIER FAMILY 13 MEMBER
KAK2193453.1-
KAK2193454.1PROTEIN CBG26694
KAK2193455.1SOLUTE CARRIER FAMILY 13 MEMBER
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