Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2192670.1 | |
| KAK2192671.1 | |
| KAK2192672.1 | |
| KAK2192673.1 | CYTOCHROME P450 FAMILY 7 |
| KAK2192674.1 | CYTOCHROME P450 FAMILY 7 |
| KAK2192675.1 | |
| KAK2192676.1 | |
| KAK2192677.1 | BCR-ASSOCIATED PROTEIN, BAP |
| KAK2192678.1 | UNCHARACTERIZED |
| KAK2192679.1 | INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED |
| KAK2192680.1 | PROTEIN CBG26694 |
| KAK2192681.1 | |
| KAK2192682.1 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
| KAK2192683.1 | |
| KAK2192684.1 | SERINE/THREONINE-PROTEIN KINASE FRAY2 |
| KAK2192685.1 | |
| KAK2192686.1 | DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A |
| KAK2192687.1 | PEPTIDASE |
| KAK2192688.1 | RETINOL DEHYDROGENASE |
| KAK2192689.1 | |
| KAK2192690.1 | |
| KAK2192691.1 | |
| KAK2192692.1 | |
| KAK2192693.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2192694.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| KAK2192695.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| KAK2192696.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| KAK2192697.1 | |
| KAK2192698.1 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| KAK2192699.1 | |
| KAK2192700.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| KAK2192701.1 | COLLAGEN ALPHA |
| KAK2192702.1 | TOL-PAL SYSTEM PROTEIN TOLA |
| KAK2192626.1 | - |
| KAK2192627.1 | ALPHA-L-FUCOSIDASE |
| KAK2192628.1 | UPF0472 PROTEIN C16ORF72 |
| KAK2192629.1 | |
| KAK2192630.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| KAK2192631.1 | |
| KAK2192632.1 | CALCIUM BINDING PROTEIN |
| KAK2192633.1 | |
| KAK2192634.1 | MYOSIN LIGHT CHAIN 1, 3 |
| KAK2192635.1 | OVOCHYMASE-RELATED |
| KAK2192636.1 | |
| KAK2192637.1 | MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S30/P52 PRO-APOTOTIC PROTEIN |
| KAK2192638.1 | |
| KAK2192639.1 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
| KAK2192640.1 | |
| KAK2192641.1 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
| KAK2192642.1 |
