Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.
Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Riftia (Genus); Riftia pachyptila (Species)
Riftia pachyptila Jones, 1981
1. Jones M L. Riftia pachyptila, new genus, new species, the vestimentiferan worm from the Galapagos Rift geothermal vents (Pogonophora)[J]. 1981. (Jones et al., 1981)
Galapagos Rift, Rose Garden geothermal vent 0.8042 (0° 48' 15" N) -86.2247 (86° 13' 29" W), 2,450 meters
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Riftia pachyptila | Annelida | Cold seep, Deep sea, Vent field | 2,514 | hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W) | 6426 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness (%) | Scaffold/Contig N50 (kb) | GC content (%) | Repeat Rate (%) | Gene Number |
|---|---|---|---|---|---|---|---|---|---|---|---|
| - | 554Mb | Contig | 2023 | - | QUEEN MARY UNIVERSITY OF LONDON | PRJEB55047 | 99.37 | 2870 | 40.49 | 29.99 | 37,037 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid worms | nature communications | 37198188 |
| Gene ID | Description |
|---|---|
| RPACG07441.1 | - |
| RPACG07442.1 | - |
| RPACG07443.1 | - |
| RPACG07444.1 | - |
| RPACG07445.1 | SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN |
| RPACG07446.1 | THREE PRIME REPAIR EXONUCLEASE 1, 2 |
| RPACG07447.1 | INOSITOL POLYPHOSPHATE 5-PHOSPHATASE E |
| RPACG07448.1 | ZINC FINGER PROTEIN |
| RPACG07449.1 | NEUROPATHY TARGET ESTERASE/SWISS CHEESE D.MELANOGASTER |
| RPACG07450.1 | HISTIDINE-RICH GLYCOPROTEIN |
| RPACG07451.1 | CALCIUM-ACTIVATED POTASSIUM CHANNEL SUBUNIT BETA |
| RPACG07452.1 | GENERAL TRANSCRIPTION FACTOR IIIC, POLYPEPTIDE 5 |
| RPACG07453.1 | OPSIN |
| RPACG07453.2 | - |
| RPACG07454.1 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| RPACG07455.1 | - |
| RPACG07456.1 | ANTIBIOTIC RESISTANCE PROTEIN MCBG |
| RPACG07457.1 | INNEXIN |
| RPACG07458.1 | GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE |
| RPACG07459.1 | GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE |
