About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG18596.1
RPACG18597.1
RPACG18598.1
RPACG18599.1
RPACG18600.1EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
RPACG18601.1TELOMERE REPEAT-BINDING FACTOR 2-INTERACTING PROTEIN 1
RPACG18602.1STEROL DESATURASE
RPACG18603.1GLYCOSYLTRANSFERASE-RELATED
RPACG18604.1
RPACG18605.1
RPACG18606.1
RPACG18607.1
RPACG18608.1
RPACG18609.1
RPACG18610.1
RPACG18611.1
RPACG18612.1
RPACG18613.1
RPACG18614.1
RPACG18615.1
RPACG18616.1
RPACG18617.1
RPACG18618.1
RPACG18619.1
RPACG18619.2
RPACG18620.1
RPACG18621.1
RPACG18622.1BLR2807 PROTEIN
RPACG18623.1CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2
RPACG18624.1
RPACG18625.1
RPACG18626.1CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2
RPACG18626.2
RPACG18627.1CRUMBS FAMILY MEMBER
RPACG18628.1
RPACG18629.1MUCIN 4-RELATED
RPACG18630.1RAS-LIKE FAMILY MEMBER 11
RPACG18631.1CST COMPLEX SUBUNIT CTC1
RPACG18632.1CYSTEINE-RICH, ACIDIC INTEGRAL MEMBRANE PROTEIN-RELATED
RPACG18633.1CST COMPLEX SUBUNIT CTC1
RPACG18633.2
RPACG18634.1UNCHARACTERIZED
RPACG18635.1ZINC FINGER RNA-BINDING PROTEIN
RPACG18636.1GLYCOSIDASE FAMILY 31
RPACG18637.1ZGC:101858
RPACG18638.1SERUM RESPONSE FACTOR-BINDING
RPACG18639.1
RPACG18640.1
RPACG18641.1TRANSCRIPTION FACTOR GATA FAMILY MEMBER
RPACG18642.1
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