About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG18508.1
RPACG18509.1RETROTRANSPOSON GAG-LIKE PROTEIN 9
RPACG18510.1
RPACG18511.1RNA-BINDING MOTIF PROTEIN 14B
RPACG18512.1UBIQUITIN-PROTEIN LIGASE E3C
RPACG18512.2
RPACG18513.1-
RPACG18514.1-
RPACG18515.1-
RPACG18516.1-
RPACG18517.1-
RPACG18517.2
RPACG18517.3
RPACG18518.1UNCHARACTERIZED
RPACG18519.1UNCHARACTERIZED
RPACG18520.1HIGH-AFFINITY CHOLINE TRANSPORTER 1
RPACG18521.1HIGH-AFFINITY CHOLINE TRANSPORTER 1
RPACG18522.1
RPACG18523.1INTEGRATOR COMPLEX SUBUNIT 2
RPACG18524.1DEATH DOMAIN-CONTAINING PROTEIN CRADD
RPACG18525.1ODD-SKIPPED - RELATED
RPACG18526.1
RPACG18527.1
RPACG18528.1COLLAGEN ALPHA
RPACG18528.2
RPACG18529.1ALANINE RACEMASE
RPACG18529.2
RPACG18530.1ALANINE RACEMASE
RPACG18531.1CELL FATE DETERMINING PROTEIN MAB21-RELATED
RPACG18532.1
RPACG18533.1SOLUTE CARRIER FAMILY 22 MEMBER
RPACG18534.1
RPACG18534.2
RPACG18535.1ELONGATOR COMPLEX PROTEIN 1
RPACG18536.1
RPACG18537.1ZINC FINGER PROTEIN
RPACG18538.1SORTING NEXIN-22 AND 24
RPACG18539.1REGULATOR OF CHROMOSOME CONDENSATION
RPACG18540.1
RPACG18541.1
RPACG18542.1
RPACG18543.1REGULATOR OF CHROMOSOME CONDENSATION
RPACG18544.1
RPACG18545.1
RPACG18546.1
RPACG18547.1NUCLEAR HORMONE RECEPTOR
RPACG18548.1
RPACG18548.2
RPACG18549.1
RPACG18550.1
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