About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG18643.1ZINC FINGER PROTEIN
RPACG18644.1
RPACG18645.1TRANSCRIPTIONAL REPRESSOR PROTEIN YY
RPACG18646.1
RPACG18647.1
RPACG18648.1
RPACG18649.1
RPACG18650.1
RPACG18651.1METHYLTRANSFERASE TYPE 11
RPACG18652.1
RPACG18653.1
RPACG18654.1SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
RPACG18655.1ENDOSULFINE
RPACG18656.1PHOSPHATIDYLINOSITOL GLYCAN
RPACG18657.1ADP-DEPENDENT GLUCOKINASE
RPACG18658.1METAXIN RELATED
RPACG18659.1S PHASE CYCLIN A-ASSOCIATED PROTEIN IN THE ENDOPLASMIC RETICULUM
RPACG18660.1
RPACG18661.1
RPACG18662.1
RPACG18663.1
RPACG18664.1
RPACG18665.1INSULIN GENE ENHANCER PROTEIN
RPACG18666.1HELICASE
RPACG18667.1
RPACG18668.1
RPACG18669.1
RPACG18669.2
RPACG18670.1
RPACG18671.1
RPACG18671.2
RPACG18672.1
RPACG18672.2
RPACG18673.1
RPACG18674.1
RPACG18675.1
RPACG18676.1
RPACG18677.1POLYGALACTURONASE 1 BETA-LIKE PROTEIN 2
RPACG18678.1
RPACG18679.1
RPACG18680.1
RPACG18681.1PORCUPINE
RPACG18681.2
RPACG18682.1PROTEIN CBG03580
RPACG18683.1RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN
RPACG18684.1FTP DOMAIN-CONTAINING PROTEIN
RPACG18685.1
RPACG18686.1
RPACG18686.2
RPACG18687.1OSJNBA0004B13.7 PROTEIN
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