About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG18803.1D-ALANYL-D-ALANINE-CARBOXYPEPTIDASE/ENDOPEPTIDASE AMPH
RPACG18804.1EGF-LIKE DOMAIN-CONTAINING PROTEIN
RPACG18805.1
RPACG18806.1
RPACG18807.1
RPACG18808.1
RPACG18809.1
RPACG18810.1
RPACG18810.2
RPACG18811.1
RPACG18812.1
RPACG18813.1EGF-LIKE DOMAIN-CONTAINING PROTEIN
RPACG18814.1
RPACG18815.1
RPACG18816.1
RPACG18817.1
RPACG18818.1
RPACG18818.2
RPACG18819.1DACHSHUND
RPACG18820.1DACHSHUND
RPACG18820.2
RPACG18821.1
RPACG18822.1TRANSMEMBRANE PROTEIN 33
RPACG18823.1SET AND MYND DOMAIN-CONTAINING PROTEIN 4
RPACG18824.1RAN GTPASE-ACTIVATING PROTEIN 1
RPACG18825.1ATILLA, ISOFORM B-RELATED-RELATED
RPACG18826.1ATILLA, ISOFORM B-RELATED-RELATED
RPACG18827.1
RPACG18828.1
RPACG18828.2
RPACG18828.3
RPACG18829.1COLLAGEN ALPHA
RPACG18829.2
RPACG18829.3
RPACG18829.4
RPACG18829.5
RPACG18830.1COLLAGEN ALPHA
RPACG18830.2
RPACG18831.1COLLAGEN ALPHA
RPACG18831.2
RPACG18832.1COLLAGEN ALPHA
RPACG18833.1COLLAGEN ALPHA
RPACG18834.1COLLAGEN ALPHA
RPACG18835.1COLLAGEN ALPHA
RPACG18836.1COLLAGEN ALPHA
RPACG18837.1SH3-BINDING
RPACG18838.1ANTIBIOTIC RESISTANCE PROTEIN MCBG
RPACG18839.1SH3-BINDING
RPACG18840.1
RPACG18841.1SERINE/THREONINE-PROTEIN KINASE IAL-RELATED
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