About Bathynomus jamesi

Bathynomus jamesi is widely distributed across different environments including the deep-sea and as such are a useful model for studying adaptation, migration, and speciation. They have larger body size than their shallow water relatives and have large stomachs and fat bodies presumably to store organic reserves. To adapt to the benthic environment, they adopt a burrowing behavior . They have developed an oversized stomach, which can take approximately 2/3 of the whole body cavity when it fills up with food. In addition, they are well known for their extremely long fasting state, which should be the longest record to date. Larger animals usually have greater absolute energy requirements.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Bathynomus jamesiArthropoda-Hydrothermal vent898near Hainan Island, in the northern South China Sea (17° 46.845′ N, 110° 38.217′ E)1955234

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM2301448v15.89GbContig2022JAJOZX01Institute of Oceanology, Chinese Academy of SciencesPRJNA77607694.80%23,221

References
TitleJournalPubmed ID
Genome of a giant isopod, Bathynomus jamesi, provides insights into body size evolution and adaptation to deep-sea environmentBMC Biology35562825

Gene Information

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Gene IDDescription
mRNA.BJAM.scaffold403.3025ADIPOCYTE-SPECIFIC PROTEIN 4-RELATED
mRNA.BJAM.scaffold403.3026LD33804P
mRNA.BJAM.scaffold403.3027ADAPTIN, ALPHA/GAMMA/EPSILON
mRNA.BJAM.scaffold4030.14970
mRNA.BJAM.scaffold4030.14971AAA-FAMILY ATPASE
mRNA.BJAM.scaffold4030.14972AAA DOMAIN-CONTAINING
mRNA.BJAM.scaffold4030.14973UBIQUITIN LIGASE E3 ALPHA-RELATED
mRNA.BJAM.scaffold4030.14974
mRNA.BJAM.scaffold4030.14975UBIQUITIN LIGASE E3 ALPHA-RELATED
mRNA.BJAM.scaffold4030.14976UBIQUITIN LIGASE E3 ALPHA-RELATED
mRNA.BJAM.scaffold4031.14977TRANSMEMBRANE PROTEASE SERINE
mRNA.BJAM.scaffold4031.14978ACROSIN-RELATED
mRNA.BJAM.scaffold4031.14979TRANSMEMBRANE PROTEASE SERINE
mRNA.BJAM.scaffold4031.14980ACROSIN-RELATED
mRNA.BJAM.scaffold4031.14981TRANSMEMBRANE PROTEASE SERINE
mRNA.BJAM.scaffold4031.14982ACROSIN-RELATED
mRNA.BJAM.scaffold4031.14983TRANSMEMBRANE PROTEASE SERINE
mRNA.BJAM.scaffold4031.14984ACROSIN-RELATED
mRNA.BJAM.scaffold4032.1498580 KDA MCM3-ASSOCIATED PROTEIN
mRNA.BJAM.scaffold4034.14986GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE
mRNA.BJAM.scaffold4034.14987GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE
mRNA.BJAM.scaffold4034.14988
mRNA.BJAM.scaffold4034.14989CUBILIN
mRNA.BJAM.scaffold4034.14990LYSM AND PUTATIVE PEPTIDOGLYCAN-BINDING DOMAIN-CONTAINING PROTEIN
mRNA.BJAM.scaffold4035.14991REGULATING SYNAPTIC MEMBRANE EXOCYTOSIS PROTEIN
mRNA.BJAM.scaffold4035.14992
mRNA.BJAM.scaffold4035.14993REGULATING SYNAPTIC MEMBRANE EXOCYTOSIS PROTEIN
mRNA.BJAM.scaffold4035.14994
mRNA.BJAM.scaffold4036.14995EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN
mRNA.BJAM.scaffold4037.14996
mRNA.BJAM.scaffold4037.14997
mRNA.BJAM.scaffold4037.14998VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1
mRNA.BJAM.scaffold4037.14999VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1
mRNA.BJAM.scaffold4037.15000VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1
mRNA.BJAM.scaffold4038.15001DEFECTIVE PROBOSCIS EXTENSION RESPONSE DPR -RELATED
mRNA.BJAM.scaffold404.3028CONTACTIN 5
mRNA.BJAM.scaffold4040.15002SERINE/THREONINE-PROTEIN KINASE IAL-RELATED
mRNA.BJAM.scaffold4043.15003BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR
mRNA.BJAM.scaffold4043.15004BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR
mRNA.BJAM.scaffold4045.15005ALPHA-L-FUCOSIDASE
mRNA.BJAM.scaffold4046.15006SELENIDE, WATER DIKINASE
mRNA.BJAM.scaffold4046.15007TRANSCRIPTION INITIATION FACTOR IIB-RELATED
mRNA.BJAM.scaffold4046.15008TRNA (GUANINE-9-) METHYLTRANSFERASE
mRNA.BJAM.scaffold4046.15009P53 REGULATED PA26 NUCLEAR PROTEIN SESTRIN
mRNA.BJAM.scaffold4047.15010
mRNA.BJAM.scaffold4047.15011CYCLIN D1-BINDING PROTEIN 1
mRNA.BJAM.scaffold4048.15013ELONGATION FACTOR G, MITOCHONDRIAL
mRNA.BJAM.scaffold4048.15014RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY
mRNA.BJAM.scaffold4049.15015HOMEOBOX PROTEIN SIX
mRNA.BJAM.scaffold4049.15016
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