About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS00051SPONDIN
HS00052REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS00053NEUREXOPHILIN
HS00054REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS00055NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
HS00056PHD FINGER PROTEINS
HS00057AGAP011572-PA
HS00058UBAP1-MVB12-ASSOCIATED (UMA)-DOMAIN CONTAINING PROTEIN 1
HS00059REPLICATION PROTEIN A3
HS00060COLLAGEN ALPHA
HS00061BETA1,3-GALACTOSYLTRANSFERASE
HS00062DC11 ACN9 HOMOLOG
HS00063TACHYKININ
HS00064ASPARAGINE SYNTHETASE
HS00065NUCLEAR HORMONE RECEPTOR
HS00066
HS00067
HS00068COLLAGEN ALPHA
HS00069ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
HS00070FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS
HS00071ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL
HS00072TAPASIN
HS00073DEATH DOMAIN-ASSOCIATED PROTEIN 6 DAXX
HS00074SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER
HS00075AGAP004733-PA
HS00076KINESIN-LIKE PROTEIN KLP-3
HS00077PR DOMAIN ZINC FINGER PROTEIN
HS00078
HS00079TRANSCRIPTION FACTOR 19
HS00080NECTIN-2
HS00081PROTEIN CBG26694
HS00082SODIUM/POTASSIUM-TRANSPORTING ATPASE SUBUNIT ALPHA
HS00083
HS00084POU DOMAIN
HS00085REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS00086ETS
HS00087
HS00088
HS00089HMG-BOX TRANSCRIPTION FACTOR BBX
HS00090HMG-BOX TRANSCRIPTION FACTOR BBX
HS00091GLYCOGEN SYNTHASE KINASE-3 ALPHA
HS00092
HS00093
HS00094TGF-BETA FAMILY
HS00095ENVOPLAKIN
HS00096NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 5
HS00097RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING
HS00098NUCLEOTIDE KINASE
HS00099LITHOSTATHINE
HS00100ZINC FINGER MYM-TYPE PROTEIN
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