About Bathynomus jamesi

Bathynomus jamesi is widely distributed across different environments including the deep-sea and as such are a useful model for studying adaptation, migration, and speciation. They have larger body size than their shallow water relatives and have large stomachs and fat bodies presumably to store organic reserves. To adapt to the benthic environment, they adopt a burrowing behavior . They have developed an oversized stomach, which can take approximately 2/3 of the whole body cavity when it fills up with food. In addition, they are well known for their extremely long fasting state, which should be the longest record to date. Larger animals usually have greater absolute energy requirements.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Bathynomus jamesiArthropoda-Hydrothermal vent898near Hainan Island, in the northern South China Sea (17° 46.845′ N, 110° 38.217′ E)1955234

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM2301448v15.89GbContig2022JAJOZX01Institute of Oceanology, Chinese Academy of SciencesPRJNA77607694.80%23,221

References
TitleJournalPubmed ID
Genome of a giant isopod, Bathynomus jamesi, provides insights into body size evolution and adaptation to deep-sea environmentBMC Biology35562825

Gene Information

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Gene IDDescription
mRNA.BJAM.scaffold10423.21278ARGININOSUCCINATE LYASE
mRNA.BJAM.scaffold1043.6292SIDESTEP PROTEIN
mRNA.BJAM.scaffold1043.6293CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
mRNA.BJAM.scaffold10432.21279CARBOXYLESTERASE
mRNA.BJAM.scaffold10432.21280CARBOXYLIC ESTER HYDROLASE
mRNA.BJAM.scaffold10437.21281CRUMBS FAMILY MEMBER
mRNA.BJAM.scaffold10437.21282
mRNA.BJAM.scaffold10439.21283ATP-BINDING CASSETTE SUB-FAMILY C
mRNA.BJAM.scaffold1044.6294DNAJ-LIKE-2, ISOFORM A-RELATED
mRNA.BJAM.scaffold1044.6295DNAJ-LIKE-2, ISOFORM A-RELATED
mRNA.BJAM.scaffold1044.6296F-BOX ONLY PROTEIN 33
mRNA.BJAM.scaffold1044.6297UNCHARACTERIZED
mRNA.BJAM.scaffold1044.6298SEPTIN
mRNA.BJAM.scaffold1044.6299ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 12
mRNA.BJAM.scaffold1044.6300
mRNA.BJAM.scaffold1044.6301ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 12
mRNA.BJAM.scaffold1044.63024-HYDROXYPHENYLPYRUVATE DIOXYGENASE
mRNA.BJAM.scaffold1044.63034-HYDROXYPHENYLPYRUVATE DIOXYGENASE
mRNA.BJAM.scaffold1044.630430S 40S RIBOSOMAL PROTEIN
mRNA.BJAM.scaffold1044.63054-HYDROXYPHENYLPYRUVATE DIOXYGENASE
mRNA.BJAM.scaffold10445.21284
mRNA.BJAM.scaffold10446.21285DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED
mRNA.BJAM.scaffold10447.21286SUPEROXIDE DISMUTASE CU-ZN -RELATED
mRNA.BJAM.scaffold10447.21287SUPEROXIDE DISMUTASE CU-ZN -RELATED
mRNA.BJAM.scaffold10447.21288SUPEROXIDE DISMUTASE CU-ZN -RELATED
mRNA.BJAM.scaffold1045.6306
mRNA.BJAM.scaffold1045.6307CYSTEINE PROTEASE FAMILY C1-RELATED
mRNA.BJAM.scaffold10455.21289
mRNA.BJAM.scaffold10456.21290ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE
mRNA.BJAM.scaffold10456.21291ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE
mRNA.BJAM.scaffold10463.21292
mRNA.BJAM.scaffold10463.21293
mRNA.BJAM.scaffold10463.21294UNC80
mRNA.BJAM.scaffold10463.21295
mRNA.BJAM.scaffold10464.2129726S PROTEASOME REGULATORY SUBUNIT
mRNA.BJAM.scaffold10466.21298
mRNA.BJAM.scaffold10466.21299
mRNA.BJAM.scaffold10466.21300
mRNA.BJAM.scaffold1047.6308DET1 HOMOLOG DE-ETIOLATED-1 HOMOLOG
mRNA.BJAM.scaffold1047.6309DET1 HOMOLOG DE-ETIOLATED-1 HOMOLOG
mRNA.BJAM.scaffold1047.6310DET1 HOMOLOG DE-ETIOLATED-1 HOMOLOG
mRNA.BJAM.scaffold1047.6311SJOEGREN SYNDROME/SCLERODERMA AUTOANTIGEN 1
mRNA.BJAM.scaffold10472.21301BTB DOMAIN TRANSCRIPTION FACTOR
mRNA.BJAM.scaffold10473.21302UNCHARACTERIZED
mRNA.BJAM.scaffold10473.21303PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE
mRNA.BJAM.scaffold10474.21304
mRNA.BJAM.scaffold10474.21305
mRNA.BJAM.scaffold10474.21306ALPHA-AMYLASE FAMILY MEMBER
mRNA.BJAM.scaffold10474.21307ALPHA-AMYLASE FAMILY MEMBER
mRNA.BJAM.scaffold10477.21308MALE FERTILITY FACTOR KL5
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