About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g10763THAP DOMAIN PROTEIN
Clavulariidae_g10764DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10765REVERSE TRANSCRIPTASES
Clavulariidae_g10766INNER MEMBRANE TRANSPORT PROTEIN YAJR
Clavulariidae_g10767TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g10768REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10769HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
Clavulariidae_g1077
Clavulariidae_g10770REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10771SGNH_HYDRO DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10772
Clavulariidae_g10773DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g10774DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g10775
Clavulariidae_g10776EXPRESSED PROTEIN
Clavulariidae_g10777
Clavulariidae_g10778COLLAGEN ALPHA
Clavulariidae_g10779
Clavulariidae_g1078
Clavulariidae_g10780DNA POLYMERASE
Clavulariidae_g10781
Clavulariidae_g10782REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10783INNER MEMBRANE TRANSPORT PROTEIN YAJR
Clavulariidae_g10784INNER MEMBRANE TRANSPORT PROTEIN YAJR
Clavulariidae_g10785CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g10786ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10787
Clavulariidae_g10788
Clavulariidae_g10789EXPRESSED PROTEIN
Clavulariidae_g1079PROTEIN CBG26694
Clavulariidae_g10790
Clavulariidae_g10791
Clavulariidae_g10792THAP DOMAIN PROTEIN
Clavulariidae_g10793
Clavulariidae_g10794
Clavulariidae_g10795ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10796
Clavulariidae_g10797CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g10798CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g10799PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g108PROTEIN PATCHED
Clavulariidae_g1080
Clavulariidae_g10800-
Clavulariidae_g10801
Clavulariidae_g10802PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10803
Clavulariidae_g10804
Clavulariidae_g10805
Clavulariidae_g10806INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g10807TRANSPOSASE, PUTATIVE-RELATED
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