Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s008.g0597.t1 | DEDICATOR OF CYTOKINESIS DOCK |
| Lsat_s009.g0001.t1 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN |
| Lsat_s009.g0002.t1 | TRANSMEMBRANE PROTEIN 101 |
| Lsat_s009.g0003.t1 | PROTEIN KISH-A |
| Lsat_s009.g0004.t1 | |
| Lsat_s009.g0005.t1 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Lsat_s009.g0006.t1 | |
| Lsat_s009.g0007.t1 | ACYL-COA SYNTHETASE |
| Lsat_s009.g0008.t1 | XRP2 PROTEIN |
| Lsat_s009.g0009.t1 | AGAP008648-PA |
| Lsat_s009.g0010.t1 | RAN BINDING PROTEIN 9-RELATED |
| Lsat_s009.g0011.t1 | VACUOLAR PROTEIN SORTING 26 RELATED |
| Lsat_s009.g0012.t1 | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B |
| Lsat_s009.g0013.t1 | PUR-TRANSCRIPTIONAL ACTIVATOR |
| Lsat_s009.g0014.t1 | |
| Lsat_s009.g0015.t1 | |
| Lsat_s009.g0016.t1 | RHO GUANINE EXCHANGE FACTOR-RELATED |
| Lsat_s009.g0017.t1 | GOLGI SNARE BET1-RELATED |
| Lsat_s009.g0018.t1 | NADP-SPECIFIC ISOCITRATE DEHYDROGENASE |
| Lsat_s009.g0019.t1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED |
| Lsat_s009.g0020.t1 | BTB DOMAIN-CONTAINING PROTEIN |
| Lsat_s009.g0021.t1 | |
| Lsat_s009.g0022.t1 | MICROFIBRIL-ASSOCIATED PROTEIN |
| Lsat_s009.g0023.t1 | |
| Lsat_s009.g0024.t1 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
| Lsat_s009.g0025.t1 | - |
| Lsat_s009.g0026.t1 | FAST LEU-RICH DOMAIN-CONTAINING |
| Lsat_s009.g0027.t1 | 60S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT N |
| Lsat_s009.g0028.t1 | |
| Lsat_s009.g0029.t1 | GPI-ANCHORED PROTEIN P137 |
| Lsat_s009.g0030.t1 | |
| Lsat_s009.g0031.t1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
| Lsat_s009.g0032.t1 | FIVE-SPAN TRANSMEMBRANE PROTEIN M83 |
| Lsat_s009.g0033.t1 | |
| Lsat_s009.g0034.t1 | NUCLEAR PORE MEMBRANE GLYCOPROTEIN GP210-RELATED |
| Lsat_s009.g0035.t1 | SH2-SH3 ADAPTOR PROTEIN-RELATED |
| Lsat_s009.g0036.t1 | TRNA (CYTOSINE(38)-C(5))-METHYLTRANSFERASE |
| Lsat_s009.g0037.t1 | 60 KDA RIBONUCLEOPROTEIN SSA/RO |
| Lsat_s009.g0038.t1 | PLAKOPHILLIN-RELATED |
| Lsat_s009.g0039.t1 | EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN |
| Lsat_s009.g0040.t1 | UNCHARACTERIZED |
| Lsat_s009.g0041.t1 | |
| Lsat_s009.g0042.t1 | |
| Lsat_s009.g0043.t1 | PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED |
| Lsat_s009.g0044.t1 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
| Lsat_s009.g0045.t1 | RHO FAMILY GTPASE |
| Lsat_s009.g0046.t1 | RHO FAMILY GTPASE |
| Lsat_s009.g0047.t1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Lsat_s009.g0048.t1 | SCY1-RELATED S/T PROTEIN KINASE-LIKE |
| Lsat_s009.g0049.t1 |
