About Bathynomus jamesi

Bathynomus jamesi is widely distributed across different environments including the deep-sea and as such are a useful model for studying adaptation, migration, and speciation. They have larger body size than their shallow water relatives and have large stomachs and fat bodies presumably to store organic reserves. To adapt to the benthic environment, they adopt a burrowing behavior . They have developed an oversized stomach, which can take approximately 2/3 of the whole body cavity when it fills up with food. In addition, they are well known for their extremely long fasting state, which should be the longest record to date. Larger animals usually have greater absolute energy requirements.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Bathynomus jamesiArthropoda-Hydrothermal vent898near Hainan Island, in the northern South China Sea (17° 46.845′ N, 110° 38.217′ E)1955234

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM2301448v15.89GbContig2022JAJOZX01Institute of Oceanology, Chinese Academy of SciencesPRJNA77607694.80%23,221

References
TitleJournalPubmed ID
Genome of a giant isopod, Bathynomus jamesi, provides insights into body size evolution and adaptation to deep-sea environmentBMC Biology35562825

Gene Information

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Gene IDDescription
mRNA.BJAM.scaffold1466.8034PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
mRNA.BJAM.scaffold1466.8035ODD-SKIPPED - RELATED
mRNA.BJAM.scaffold1467.8036DNA POLYMERASE CATALYTIC SUBUNIT
mRNA.BJAM.scaffold1467.8037ATP-DEPENDENT RNA HELICASE
mRNA.BJAM.scaffold1467.8038
mRNA.BJAM.scaffold1467.8039PATCHED-RELATED
mRNA.BJAM.scaffold1467.8040
mRNA.BJAM.scaffold1467.8041PATCHED-RELATED
mRNA.BJAM.scaffold1467.8042SHC TRANSFORMING PROTEIN
mRNA.BJAM.scaffold1467.8043
mRNA.BJAM.scaffold1467.8044TUBULIN
mRNA.BJAM.scaffold1467.8045
mRNA.BJAM.scaffold1467.804730S RIBOSOMAL PROTEIN S16
mRNA.BJAM.scaffold1467.8048GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNIT
mRNA.BJAM.scaffold14675.22955CYTOCHROME P450 508A4-RELATED
mRNA.BJAM.scaffold1468.8049HISTONE H3
mRNA.BJAM.scaffold14688.22956PA-PL1 PHOSPHOLIPASE FAMILY
mRNA.BJAM.scaffold1469.8050G PROTEIN-COUPLED RECEPTOR KINASE/RIBOSOMAL PROTEIN S6 KINASE
mRNA.BJAM.scaffold1469.8051ANK_REP_REGION DOMAIN-CONTAINING PROTEIN
mRNA.BJAM.scaffold1469.8052PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE
mRNA.BJAM.scaffold1469.8053
mRNA.BJAM.scaffold1469.8054
mRNA.BJAM.scaffold1469.8055
mRNA.BJAM.scaffold1469.8056
mRNA.BJAM.scaffold147.1166CUBILIN
mRNA.BJAM.scaffold147.1167
mRNA.BJAM.scaffold1470.8057
mRNA.BJAM.scaffold1470.8058MADF DOMAIN TRANSCRIPTION FACTOR
mRNA.BJAM.scaffold1470.8059
mRNA.BJAM.scaffold1470.8060PROTEIN SIDEKICK
mRNA.BJAM.scaffold1470.8061PROTEIN SIDEKICK
mRNA.BJAM.scaffold1470.8062CONTACTIN 5
mRNA.BJAM.scaffold1470.8063CONTACTIN 5
mRNA.BJAM.scaffold1470.8064
mRNA.BJAM.scaffold14703.22957
mRNA.BJAM.scaffold14709.22958LEUKOCYTE RECEPTOR CLUSTER LRC MEMBER 1
mRNA.BJAM.scaffold1471.8066UNCHARACTERIZED
mRNA.BJAM.scaffold1471.8067CELL DIVISION PROTEIN KINASE
mRNA.BJAM.scaffold1471.8068CYCLASE-LIKE PROTEIN 2
mRNA.BJAM.scaffold14717.22959NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58
mRNA.BJAM.scaffold1472.8069
mRNA.BJAM.scaffold1472.8070ODD-SKIPPED - RELATED
mRNA.BJAM.scaffold1472.8071
mRNA.BJAM.scaffold1472.8072HECT DOMAIN UBIQUITIN-PROTEIN LIGASE
mRNA.BJAM.scaffold1472.8073-
mRNA.BJAM.scaffold14720.22960
mRNA.BJAM.scaffold14720.22961THREE PRIME REPAIR EXONUCLEASE 1, 2
mRNA.BJAM.scaffold1473.8074
mRNA.BJAM.scaffold1473.8075CADHERIN-87A
mRNA.BJAM.scaffold1473.8076CADHERIN-23
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