About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_016265-T1-
OS493_016266-T1-
OS493_016267-T1PX DOMAIN-CONTAINING PROTEIN
OS493_016268-T1PX DOMAIN-CONTAINING PROTEIN
OS493_016269-T1-
OS493_016270-T1ALTERNATIVE OXIDASE
OS493_016271-T1METHIONINE AMINOPEPTIDASE
OS493_016272-T1CCAAT/ENHANCER BINDING PROTEIN
OS493_016273-T1ALTERNATIVE OXIDASE
OS493_016274-T1ALTERNATIVE OXIDASE
OS493_016275-T1METHIONINE SULFOXIDE REDUCTASE
OS493_016276-T1GLUTAMINE SYNTHETASE
OS493_016277-T1TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT GAMMA
OS493_016278-T1PROTEASOME REGULATOR PA28
OS493_016280-T1FAS APOPTOTIC INHIBITORY MOLECULE FAIM
OS493_016281-T1FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED
OS493_016282-T1G-PROTEIN COUPLED RECEPTOR
OS493_016283-T1ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_016284-T1MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED
OS493_016285-T1COLLAGEN ALPHA
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