About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_016307-T1ZINC FINGER FYVE DOMAIN-CONTAINING PROTEIN
OS493_016308-T1AMINO ACID TRANSPORTER
OS493_016309-T1-
OS493_016311-T1ZINC FINGER CCHC DOMAIN-CONTAINING PROTEIN 9 ZCCHC9
OS493_016312-T1ZINC FINGER CCHC DOMAIN-CONTAINING PROTEIN 9 ZCCHC9
OS493_016313-T1-
OS493_016314-T1PHOSPHATIDYLINOSITOL KINASE
OS493_016315-T1-
OS493_016316-T1POLYAMINE-MODULATED FACTOR 1
OS493_016317-T1-
OS493_016318-T1HALOACID DEHALOGENASE-LIKE HYDROLASE
OS493_016319-T1MITOCHONDRIAL GLYCINE TRANSPORTER
OS493_016320-T1ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN
OS493_016321-T1-
OS493_016322-T1CARBOHYDRATE SULFOTRANSFERASE
OS493_016323-T1-
OS493_016324-T1CYCLIC NUCLEOTIDE PHOSPHODIESTERASE
OS493_016326-T1BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
OS493_016327-T1TRANSLOCON-ASSOCIATED PROTEIN, BETA SUBUNIT PRECURSOR TRAP-BETA SIGNAL SEQUENCE RECEPTOR BETA SUBUNIT
OS493_016328-T1TETRATRICOPEPTIDE REPEAT PROTEIN 24
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