Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_038241-T1 | |
OS493_038242-T1 | |
OS493_038243-T1 | |
OS493_038244-T1 | MYND-TYPE DOMAIN-CONTAINING PROTEIN |
OS493_038245-T1 | |
OS493_038247-T1 | |
OS493_038248-T1 | |
OS493_038249-T1 | |
OS493_038250-T1 | |
OS493_038251-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
OS493_038252-T1 | SPORE COAT PROTEIN SP85 |
OS493_038253-T1 | |
OS493_038254-T1 | |
OS493_038255-T1 | |
OS493_038256-T1 | DNA2/NAM7 HELICASE FAMILY |
OS493_038257-T1 | NITROGEN PERMEASE REGULATOR 2/TUMOR SUPPRESSOR CANDIDATE 4 |
OS493_038258-T1 | |
OS493_038260-T1 | |
OS493_038261-T1 | NITROGEN PERMEASE REGULATOR 2/TUMOR SUPPRESSOR CANDIDATE 4 |
OS493_038262-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_038263-T1 | |
OS493_038264-T1 | |
OS493_038266-T1 | |
OS493_038267-T1 | PAXILLIN-RELATED |
OS493_038268-T1 | |
OS493_038269-T1 | |
OS493_038270-T1 | |
OS493_038271-T1 | PLATELET-DERIVED GROWTH FACTOR |
OS493_038272-T1 | |
OS493_038274-T1 | INTEGRATOR COMPLEX SUBUNIT 9 |
OS493_038276-T1 | PEPTIDYL-TRNA HYDROLASE 2 |
OS493_038277-T1 | |
OS493_038278-T1 | |
OS493_038279-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
OS493_038280-T1 | CEREBRAL PROTEIN-11-RELATED |
OS493_038282-T1 | PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 |
OS493_038283-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
OS493_038284-T1 | FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD |
OS493_038285-T1 | |
OS493_038286-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
OS493_038287-T1 | |
OS493_038289-T1 | |
OS493_038290-T1 | |
OS493_038291-T1 | KDEL LYS-ASP-GLU-LEU CONTAINING - RELATED |
OS493_038292-T1 | KDEL LYS-ASP-GLU-LEU CONTAINING - RELATED |
OS493_038293-T1 | |
OS493_038294-T1 | |
OS493_038295-T1 | |
OS493_038296-T1 | |
OS493_038297-T1 | DNA HELICASE-RELATED |