About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_038241-T1
OS493_038242-T1
OS493_038243-T1
OS493_038244-T1MYND-TYPE DOMAIN-CONTAINING PROTEIN
OS493_038245-T1
OS493_038247-T1
OS493_038248-T1
OS493_038249-T1
OS493_038250-T1
OS493_038251-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_038252-T1SPORE COAT PROTEIN SP85
OS493_038253-T1
OS493_038254-T1
OS493_038255-T1
OS493_038256-T1DNA2/NAM7 HELICASE FAMILY
OS493_038257-T1NITROGEN PERMEASE REGULATOR 2/TUMOR SUPPRESSOR CANDIDATE 4
OS493_038258-T1
OS493_038260-T1
OS493_038261-T1NITROGEN PERMEASE REGULATOR 2/TUMOR SUPPRESSOR CANDIDATE 4
OS493_038262-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_038263-T1
OS493_038264-T1
OS493_038266-T1
OS493_038267-T1PAXILLIN-RELATED
OS493_038268-T1
OS493_038269-T1
OS493_038270-T1
OS493_038271-T1PLATELET-DERIVED GROWTH FACTOR
OS493_038272-T1
OS493_038274-T1INTEGRATOR COMPLEX SUBUNIT 9
OS493_038276-T1PEPTIDYL-TRNA HYDROLASE 2
OS493_038277-T1
OS493_038278-T1
OS493_038279-T1TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
OS493_038280-T1CEREBRAL PROTEIN-11-RELATED
OS493_038282-T1PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8
OS493_038283-T1TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
OS493_038284-T1FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD
OS493_038285-T1
OS493_038286-T1TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
OS493_038287-T1
OS493_038289-T1
OS493_038290-T1
OS493_038291-T1KDEL LYS-ASP-GLU-LEU CONTAINING - RELATED
OS493_038292-T1KDEL LYS-ASP-GLU-LEU CONTAINING - RELATED
OS493_038293-T1
OS493_038294-T1
OS493_038295-T1
OS493_038296-T1
OS493_038297-T1DNA HELICASE-RELATED
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