About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_8844-1.10
Bpl_scaf_8844-1.2
Bpl_scaf_8844-1.3
Bpl_scaf_8844-1.4
Bpl_scaf_8844-1.9
Bpl_scaf_8844-2.14MISSHAPEN LIKE KINASE 1
Bpl_scaf_8844-2.7MISSHAPEN LIKE KINASE 1
Bpl_scaf_8846-0.3PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
Bpl_scaf_8854-1.4
Bpl_scaf_8854-2.14
Bpl_scaf_8854-2.15
Bpl_scaf_8854-2.18
Bpl_scaf_892-0.3
Bpl_scaf_8999-0.13
Bpl_scaf_8999-0.14
Bpl_scaf_9000-0.16COLLAGEN ALPHA
Bpl_scaf_9000-0.27COLLAGEN ALPHA
Bpl_scaf_9000-0.29COLLAGEN ALPHA
Bpl_scaf_9000-0.9
Bpl_scaf_9000-1.7COLLAGEN ALPHA
Bpl_scaf_9000-1.8UNCHARACTERIZED
Bpl_scaf_9000-2.4
Bpl_scaf_9000-2.5DISCO-INTERACTING PROTEIN 2 DIP2 -RELATED
Bpl_scaf_9000-3.1
Bpl_scaf_9000-3.12HELIX LOOP HELIX PROTEIN 21-RELATED
Bpl_scaf_9000-3.4NUCLEAR HORMONE RECEPTOR
Bpl_scaf_9000-4.10
Bpl_scaf_9000-4.8NEDD8 ULTIMATE BUSTER-1 BS4 PROTEIN
Bpl_scaf_9000-4.9NUCLEAR HORMONE RECEPTOR
Bpl_scaf_9000-5.37HISTONE H1
Bpl_scaf_9000-5.7DED DOMAIN-CONTAINING PROTEIN
Bpl_scaf_9000-7.13KRUEPPEL-LIKE TRANSCRIPTION FACTOR
Bpl_scaf_9000-7.14AGAP011099-PA
Bpl_scaf_9000-8.7VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 5A
Bpl_scaf_9002-0.16INTIMAL THICKNESS RECEPTOR-RELATED
Bpl_scaf_9002-0.17
Bpl_scaf_9002-0.19TYROSINE-PROTEIN KINASE RECEPTOR
Bpl_scaf_9002-0.24MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM21
Bpl_scaf_9002-0.26MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 10
Bpl_scaf_9003-0.10ACROSIN-RELATED
Bpl_scaf_9003-0.21
Bpl_scaf_9003-0.22ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD
Bpl_scaf_9003-0.9IFT140/172-RELATED
Bpl_scaf_9004-1.4
Bpl_scaf_9004-1.5
Bpl_scaf_9004-3.3RING ZINC FINGER PROTEIN
Bpl_scaf_9004-3.4RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Bpl_scaf_9004-4.1
Bpl_scaf_9004-4.17BIOTINIDASE-RELATED
Bpl_scaf_9004-4.2BIOTINIDASE-RELATED
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