Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_8245-0.5 | |
| Bpl_scaf_8246-0.3 | ANKYRIN REPEAT-CONTAINING |
| Bpl_scaf_8246-0.4 | |
| Bpl_scaf_8246-0.6 | MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED |
| Bpl_scaf_8246-1.11 | ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER |
| Bpl_scaf_8246-1.13 | STRICTOSIDINE SYNTHASE-RELATED |
| Bpl_scaf_8246-1.14 | 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL |
| Bpl_scaf_8246-1.30 | DESUMOYLATING ISOPEPTIDASE |
| Bpl_scaf_8246-1.9 | ENDO-BETA-1,4-MANNANASE |
| Bpl_scaf_8246-2.1 | |
| Bpl_scaf_8246-2.19 | |
| Bpl_scaf_8246-2.2 | |
| Bpl_scaf_8246-2.26 | |
| Bpl_scaf_8246-2.7 | |
| Bpl_scaf_827-0.0 | |
| Bpl_scaf_827-0.4 | |
| Bpl_scaf_8329-0.15 | |
| Bpl_scaf_8329-0.21 | CYSTEINE-RICH SECRETORY PROTEIN-RELATED |
| Bpl_scaf_8329-0.22 | |
| Bpl_scaf_8329-0.23 | GRB2-ASSOCIATED AND REGULATOR OF MAPK PROTEIN FAMILY MEMBER |
| Bpl_scaf_8329-1.4 | |
| Bpl_scaf_8329-2.0 | NUCLEAR FACTOR INTERLEUKIN-3-REGULATED PROTEIN |
| Bpl_scaf_8329-5.11 | TFIIF-ALPHA |
| Bpl_scaf_8329-5.6 | F-BOX ONLY PROTEIN 4 |
| Bpl_scaf_8329-6.1 | |
| Bpl_scaf_8329-6.11 | TGF-BETA FAMILY |
| Bpl_scaf_8329-6.27 | SR-RELATED CTD ASSOCIATED FACTOR 6 |
| Bpl_scaf_8329-6.29 | SERINE/THREONINE-PROTEIN KINASE |
| Bpl_scaf_8329-6.3 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN |
| Bpl_scaf_8329-6.8 | PHOSPHOHEXOMUTASE FAMILY MEMBER |
| Bpl_scaf_8329-7.2 | SR-RELATED CTD ASSOCIATED FACTOR 6 |
| Bpl_scaf_8329-8.20 | ASPARTYL PROTEASE DDI-RELATED |
| Bpl_scaf_8329-8.26 | SMALL INTEGRAL MEMBRANE PROTEIN 15 |
| Bpl_scaf_8329-8.29 | AMYLOID PROTEIN-BINDING PROTEIN 2 |
| Bpl_scaf_8329-8.31 | ADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX ASSEMBLY FACTOR 2 |
| Bpl_scaf_8329-8.39 | CEREBELLIN-RELATED |
| Bpl_scaf_8329-8.40 | ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT |
| Bpl_scaf_8329-8.42 | FIVE-SPAN TRANSMEMBRANE PROTEIN M83 |
| Bpl_scaf_8329-8.43 | FIVE-SPAN TRANSMEMBRANE PROTEIN M83 |
| Bpl_scaf_8329-8.46 | PROTEIN SHORTAGE IN CHIASMATA 1 ORTHOLOG |
| Bpl_scaf_8329-8.47 | PROTEIN SHORTAGE IN CHIASMATA 1 ORTHOLOG |
| Bpl_scaf_8330-0.10 | ZINC FINGER PROTEIN 106 |
| Bpl_scaf_8330-0.9 | |
| Bpl_scaf_8330-1.5 | SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B |
| Bpl_scaf_8330-1.6 | MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM20 |
| Bpl_scaf_8330-1.7 | CASEIN KINASE-RELATED |
| Bpl_scaf_8330-2.12 | |
| Bpl_scaf_8330-2.18 | E3 UBIQUITIN-PROTEIN LIGASE PELLINO-RELATED |
| Bpl_scaf_8330-2.19 | LEUCINE-RICH REPEAT-CONTAINING |
| Bpl_scaf_8330-2.21 | UNCHARACTERIZED |
