About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG02243.1-
RPACG02244.1DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL
RPACG02244.2
RPACG02245.1
RPACG02246.1DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL
RPACG02247.1INTEGRIN ALPHA
RPACG02248.1
RPACG02249.1MY011 PROTEIN
RPACG02250.1UPF0565 PROTEIN C2ORF69
RPACG02251.1
RPACG02252.1
RPACG02253.1-
RPACG02253.2
RPACG02254.1
RPACG02255.1
RPACG02256.1
RPACG02257.1APOLIPOPROTEIN B
RPACG02258.1-
RPACG02259.12-5 OLIGOADENYLATE SYNTHETASE
RPACG02260.1
RPACG02261.1
RPACG02262.1
RPACG02263.1
RPACG02264.1
RPACG02265.1MUCIN 4-RELATED
RPACG02266.1
RPACG02267.1
RPACG02268.1
RPACG02269.1
RPACG02269.2
RPACG02270.1PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED
RPACG02271.1GUANYLYL CYCLASE
RPACG02272.1GUANYLYL CYCLASE
RPACG02273.1PHOSPHATE-BINDING PROTEIN PSTS
RPACG02274.1GUANYLYL CYCLASE
RPACG02274.2
RPACG02275.1GUANYLYL CYCLASE
RPACG02276.1
RPACG02277.1GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE
RPACG02278.1UNCHARACTERIZED
RPACG02278.2
RPACG02279.1-
RPACG02280.1RNA BINDING PROTEIN
RPACG02281.1
RPACG02282.1
RPACG02283.1
RPACG02284.1TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
RPACG02285.1
RPACG02286.1
RPACG02287.1
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