About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

<< First 48 49 50 51 52 53 54 55 56 57 Forward> Last>>        604 pages in total

Gene IDDescription
RPACG02328.1SCAVENGER RECEPTOR CLASS B TYPE-1 SR-B1
RPACG02329.1DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA49
RPACG02330.1RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
RPACG02330.2
RPACG02331.1
RPACG02332.1
RPACG02333.1
RPACG02334.1GEM-ASSOCIATED PROTEIN 5
RPACG02335.1GEM-ASSOCIATED PROTEIN 5
RPACG02335.2
RPACG02336.1KRUEPPEL-LIKE TRANSCRIPTION FACTOR
RPACG02337.1
RPACG02338.1
RPACG02339.1
RPACG02340.1RAB GTPASE-ACTIVATING PROTEIN 1-LIKE
RPACG02340.2
RPACG02341.1
RPACG02342.1
RPACG02343.1TOLL-LIKE RECEPTOR
RPACG02344.1
RPACG02345.1
RPACG02346.1
RPACG02347.1
RPACG02348.1
RPACG02349.1
RPACG02350.139S RIBOSOMAL PROTEIN L28, MITOCHONDRIAL
RPACG02351.1TETRATRICOPEPTIDE REPEAT PROTEIN 6
RPACG02352.1
RPACG02353.1EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN
RPACG02354.1
RPACG02355.1-
RPACG02355.2
RPACG02355.3
RPACG02355.4
RPACG02355.5
RPACG02356.1
RPACG02356.2
RPACG02357.1ZINC FINGER PROTEIN 142
RPACG02358.1
RPACG02359.1
RPACG02360.1
RPACG02361.1
RPACG02362.1FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED
RPACG02363.1MATRIX PROTEIN, PUTATIVE-RELATED
RPACG02364.1PHOSPHOGLYCERATE KINASE
RPACG02364.2
RPACG02365.1CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 3
RPACG02366.1HL07962P-RELATED
RPACG02367.1
RPACG02368.1
TOP