About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG02158.2
RPACG02158.3
RPACG02158.4
RPACG02159.1UNCHARACTERIZED
RPACG02160.1PROTEIN CBG11839-RELATED
RPACG02161.1RYBP AND YAF2-RELATED
RPACG02162.1
RPACG02163.1
RPACG02164.1SH3 DOMAIN-BINDING PROTEIN 5
RPACG02165.1DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED
RPACG02166.1TRANSMEMBRANE PROTEIN 106B
RPACG02167.1LANC-LIKE PROTEIN
RPACG02168.1CYTOCHROME P450 FAMILY 7
RPACG02169.1TERPENE CYCLASE/MUTASE FAMILY MEMBER
RPACG02170.1
RPACG02171.1
RPACG02172.1BCL-2 RELATED
RPACG02173.1ACETYLTRANSFERASE
RPACG02174.1
RPACG02175.1UNCHARACTERIZED
RPACG02176.1S-ANTIGEN PROTEIN
RPACG02177.1S-ANTIGEN PROTEIN
RPACG02178.1TRANSMEMBRANE PROTEIN
RPACG02178.2
RPACG02179.1
RPACG02180.1-
RPACG02181.1
RPACG02182.1
RPACG02183.1LEUCINE-ZIPPER-LIKE TRANSCRIPTIONAL REGULATOR 1
RPACG02183.2
RPACG02183.3
RPACG02184.1
RPACG02185.1
RPACG02186.1STG PROTEIN
RPACG02187.1
RPACG02188.1STG PROTEIN
RPACG02189.1
RPACG02190.1
RPACG02191.1STG PROTEIN
RPACG02192.1
RPACG02193.1
RPACG02193.2
RPACG02193.3
RPACG02193.4
RPACG02194.1DUF614 FAMILY PROTEIN-RELATED
RPACG02195.1
RPACG02195.2
RPACG02196.1TELOMERE-ASSOCIATED PROTEIN RIF1
RPACG02197.1PROTEIN CBG17025
RPACG02198.1
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