About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG01983.1
RPACG01984.1
RPACG01985.1
RPACG01986.1
RPACG01987.1SI:CH211-171H4.7-RELATED
RPACG01987.2
RPACG01988.1AMINOMETHYLTRANSFERASE
RPACG01989.1BETAINE--HOMOCYSTEINE S-METHYLTRANSFERASE 1
RPACG01989.2
RPACG01990.1UNCHARACTERIZED
RPACG01991.1P300 TRANSCRIPTIONAL COFACTOR JMY-RELATED
RPACG01992.1COLLAGEN IV NC1 DOMAIN-CONTAINING PROTEIN
RPACG01992.2
RPACG01993.1RAS GTPASE-ACTIVATING PROTEIN WITH IQ MOTIF
RPACG01994.1
RPACG01995.1
RPACG01996.1
RPACG01997.1TRANSFERASE, PUTATIVE-RELATED
RPACG01998.1
RPACG01999.1TRANSFERASE, PUTATIVE-RELATED
RPACG02000.1
RPACG02000.2
RPACG02001.1
RPACG02002.1
RPACG02003.1
RPACG02004.1MATING RESPONSE PROTEIN POI2
RPACG02005.1NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
RPACG02006.1ACETYLTRANSFERASE
RPACG02007.1
RPACG02008.1
RPACG02009.1
RPACG02010.1SIGNAL-TRANSDUCING ADAPTOR PROTEIN-RELATED
RPACG02011.1
RPACG02012.1
RPACG02013.1
RPACG02014.1
RPACG02014.2
RPACG02014.3
RPACG02014.4
RPACG02014.5
RPACG02015.1
RPACG02016.1
RPACG02017.1WD40 REPEAT DOMAIN 95
RPACG02018.1WD40 REPEAT DOMAIN 95
RPACG02019.1
RPACG02020.1
RPACG02021.1
RPACG02022.1
RPACG02023.1
RPACG02024.1
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