About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Original Description/Redescription

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Partial Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution/Locality

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8007531.1PEPTIDYL-PROLYL CIS-TRANS ISOMERASE D
CAI8007532.1-
CAI8007534.130S RIBOSOMAL PROTEIN S18
CAI8007533.1-
CAI8007536.1SINGLE-STRANDED DNA-BINDING PROTEIN
CAI8007535.1SINGLE-STRANDED DNA-BINDING PROTEIN
CAI8007537.1MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6
CAI8007538.1ZGC:194242
CAI8007539.13-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE
CAI8007540.1HYDROLASE, HALOACID DELAHOGENASE-RELATED
CAI8007541.1OLIGOPEPTIDE/DIPEPTIDE ABC TRANSPORTER, ATPASE SUBUNIT
CAI8007542.1ABC-TYPE DIPEPTIDE/OLIGOPEPTIDE TRANSPORT SYSTEM, ATPASE COMPONENT
CAI8007544.1OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD
CAI8007547.1TRANSPORT ATP-BINDING PROTEIN
CAI8007548.1TRANSPORT ATP-BINDING PROTEIN
CAI8007545.1TRANSPORT ATP-BINDING PROTEIN
CAI8007546.1TRANSPORT ATP-BINDING PROTEIN
CAI8007543.1TRANSPORT ATP-BINDING PROTEIN
CAI8007549.1OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD
CAI8007550.1OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD
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