About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Original Description/Redescription

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Partial Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution/Locality

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8007410.1-
CAI8007412.1E3 UBIQUITIN-PROTEIN LIGASE UBR5
CAI8007413.1E3 UBIQUITIN-PROTEIN LIGASE UBR5
CAI8007414.1E3 UBIQUITIN-PROTEIN LIGASE UBR5
CAI8007417.1E3 UBIQUITIN-PROTEIN LIGASE UBR5
CAI8007416.1E3 UBIQUITIN-PROTEIN LIGASE UBR5
CAI8007415.1E3 UBIQUITIN-PROTEIN LIGASE UBR5
CAI8007418.1E3 UBIQUITIN-PROTEIN LIGASE UBR5
CAI8007419.1E3 UBIQUITIN-PROTEIN LIGASE UBR5
CAI8007420.1SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1
CAI8007421.1-
CAI8007422.1PYRUVATE-FLAVODOXIN OXIDOREDUCTASE-RELATED
CAI8007423.1-
CAI8007427.1TYPE III PANTOTHENATE KINASE
CAI8007426.1TYPE III PANTOTHENATE KINASE
CAI8007424.1TYPE III PANTOTHENATE KINASE
CAI8007425.1TYPE III PANTOTHENATE KINASE
CAI8007428.1TYPE III PANTOTHENATE KINASE
CAI8007429.1-
CAI8007430.1HOMO-OLIGOMERIC FLAVIN CONTAINING CYS DECARBOXYLASE FAMILY
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