Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)
Geodia barretti Bowerbank, 1858
1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)
the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters
Geodia barretti has been found at depths from 30 to 2000 m.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness (%) | Scaffold/Contig N50 (kb) | GC content (%) | Repeat Rate (%) | Gene Number |
---|---|---|---|---|---|---|---|---|---|---|---|
Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50 | 48.4 | 49.3 | 19.05 | 31,884 |
Title | Journal | Pubmed ID |
---|---|---|
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
Gene ID | Description |
---|---|
CAI8007291.1 | - |
CAI8007292.1 | 50S RIBOSOMAL PROTEIN L36, CHLOROPLASTIC |
CAI8007293.1 | TRANSLATION INITIATION FACTOR IF-1, CHLOROPLASTIC |
CAI8007294.1 | METHIONINE AMINOPEPTIDASE |
CAI8007295.1 | NUCLEOTIDE KINASE |
CAI8007296.1 | SECY/SEC61-ALPHA FAMILY MEMBER |
CAI8007297.1 | 50S RIBOSOMAL PROTEIN L15 |
CAI8007299.1 | MITOCHONDRIAL RIBOSOMAL PROTEIN S5 |
CAI8007298.1 | MITOCHONDRIAL RIBOSOMAL PROTEIN S5 |
CAI8007300.1 | 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL |
CAI8007301.1 | 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL |
CAI8007302.1 | 60S/50S RIBOSOMAL PROTEIN L6/L9 |
CAI8007303.1 | 40S RIBOSOMAL PROTEIN S15A |
CAI8007306.1 | 60S RIBOSOMAL PROTEIN L11-RELATED |
CAI8007305.1 | 60S RIBOSOMAL PROTEIN L11-RELATED |
CAI8007304.1 | 60S RIBOSOMAL PROTEIN L11-RELATED |
CAI8007307.1 | 50S/60S RIBOSOMAL PROTEIN L14/L23 |
CAI8007308.1 | 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER |
CAI8007309.1 | 50S/60S RIBOSOMAL PROTEIN L16 |
CAI8007310.1 | 30S/40S RIBOSOMAL PROTEIN S3 |