About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG19544.1
RPACG19545.1
RPACG19546.1
RPACG19547.1
RPACG19548.1
RPACG19549.1
RPACG19550.1
RPACG19551.1
RPACG19552.1
RPACG19553.1TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 61F
RPACG19553.2
RPACG19554.1ZGC:162634
RPACG19555.1MICROSOMAL DIPEPTIDASE
RPACG19556.1
RPACG19557.1
RPACG19558.1ALPHA-1,2 MANNOSYLTRANSFERASE KTR1
RPACG19559.1
RPACG19560.1
RPACG19561.1
RPACG19562.1
RPACG19562.2
RPACG19562.3
RPACG19563.1
RPACG19564.1
RPACG19565.1
RPACG19566.1YALI0E18722P
RPACG19567.1
RPACG19568.1
RPACG19569.1
RPACG19570.1
RPACG19570.2
RPACG19571.1
RPACG19572.1
RPACG19573.1GLYPICAN
RPACG19574.1
RPACG19575.1
RPACG19576.1FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED
RPACG19577.1FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED
RPACG19578.1FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED
RPACG19579.1FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED
RPACG19580.1
RPACG19581.1FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED
RPACG19582.1FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED
RPACG19583.1
RPACG19584.1
RPACG19585.1FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED
RPACG19586.1HILLARIN
RPACG19587.1
RPACG19588.1HILLARIN
RPACG19589.1
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