About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG19455.1
RPACG19456.1
RPACG19457.1
RPACG19458.1
RPACG19459.1
RPACG19460.1
RPACG19461.1
RPACG19462.1
RPACG19463.1
RPACG19464.1
RPACG19465.1
RPACG19466.1
RPACG19467.1
RPACG19468.1MATING RESPONSE PROTEIN POI2
RPACG19469.1
RPACG19470.1MATING RESPONSE PROTEIN POI2
RPACG19471.1
RPACG19472.1POLYCYSTIN FAMILY MEMBER
RPACG19473.1VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED
RPACG19474.1BETA1,3-GALACTOSYLTRANSFERASE
RPACG19475.1
RPACG19476.1VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED
RPACG19477.1LIPASE
RPACG19478.1
RPACG19479.1LIPASE
RPACG19480.1LIPASE
RPACG19481.1
RPACG19482.1ZINC FINGER AND BTB DOMAIN-CONTAINING
RPACG19482.2
RPACG19483.1SET DOMAIN-CONTAINING PROTEIN-RELATED
RPACG19484.1ZINC FINGER PROTEIN
RPACG19485.1
RPACG19486.1SET DOMAIN-CONTAINING PROTEIN-RELATED
RPACG19487.1
RPACG19488.1FTP DOMAIN-CONTAINING PROTEIN
RPACG19488.2
RPACG19488.3
RPACG19489.1
RPACG19490.1
RPACG19491.1
RPACG19492.1
RPACG19493.1LEUCINE CARBOXYL METHYLTRANSFERASE
RPACG19494.1
RPACG19494.2
RPACG19495.1HOMEOBOX PROTEIN ARISTALESS
RPACG19496.1
RPACG19497.1LIPOPOLYSACCHARIDE CHOLINEPHOSPHOTRANSFERASE LICD
RPACG19498.1
RPACG19498.2
RPACG19499.1RCC1 DOMAIN-CONTAINING PROTEIN 1
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