About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG19284.1SEGMENTATION PROTEIN EVEN-SKIPPED
RPACG19285.1
RPACG19286.1
RPACG19287.1CONTACTIN 5
RPACG19288.1-
RPACG19289.1FORKHEAD BOX PROTEIN
RPACG19290.1
RPACG19291.1WD REPEAT-CONTAINING PROTEIN 55
RPACG19292.1
RPACG19293.1
RPACG19294.1HOMEOBOX PROTEIN ROUGH-RELATED
RPACG19295.1
RPACG19296.1MYB-LIKE PROTEIN V
RPACG19297.1
RPACG19297.2
RPACG19298.1NUCLEAR MITOTIC APPARATUS PROTEIN 1-RELATED
RPACG19299.1
RPACG19300.1LATROPHILIN RECEPTOR-LIKE PROTEIN A
RPACG19301.1
RPACG19302.1LATROPHILIN RECEPTOR-LIKE PROTEIN A
RPACG19303.1
RPACG19303.2
RPACG19304.1
RPACG19305.1
RPACG19305.2
RPACG19306.1COILED-COIL DOMAIN-CONTAINING PROTEIN 125
RPACG19307.1IONOTROPIC GLUTAMATE RECEPTOR
RPACG19308.1
RPACG19309.1PATCHED-RELATED
RPACG19310.1CRUMBS FAMILY MEMBER
RPACG19311.1SLIT HOMOLOG
RPACG19312.1
RPACG19313.1UNCHARACTERIZED
RPACG19314.1ANKYRIN REPEAT AND SOCS BOX PROTEIN 17
RPACG19315.1
RPACG19316.1
RPACG19317.1
RPACG19318.1
RPACG19319.1
RPACG19320.1
RPACG19321.1
RPACG19322.1
RPACG19323.1
RPACG19324.1
RPACG19324.2
RPACG19325.1
RPACG19326.1
RPACG19327.1SULFOTRANSFERASE DOMAIN-CONTAINING PROTEIN
RPACG19328.1CADHERIN DOMAIN-CONTAINING PROTEIN
RPACG19329.1SULFOTRANSFERASE DOMAIN-CONTAINING PROTEIN
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