About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG19590.1
RPACG19590.2
RPACG19591.1MICRO-RNA BINDING ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 7
RPACG19592.1RIBONUCLEASE
RPACG19593.1
RPACG19594.1
RPACG19595.1
RPACG19596.1EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED
RPACG19597.1TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN54
RPACG19598.1
RPACG19599.1
RPACG19600.1
RPACG19601.1
RPACG19602.1
RPACG19602.2
RPACG19603.1-
RPACG19604.1
RPACG19605.1
RPACG19606.1-
RPACG19606.2
RPACG19607.1
RPACG19608.1LIPOMA HMGIC FUSION PARTNER-LIKE PROTEIN
RPACG19609.1
RPACG19610.1UNCHARACTERIZED
RPACG19611.1
RPACG19612.1
RPACG19613.1FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED
RPACG19614.1
RPACG19615.1
RPACG19616.1
RPACG19617.1LEUCOKININ RECEPTOR-RELATED
RPACG19618.1
RPACG19619.1
RPACG19620.1S-ANTIGEN PROTEIN
RPACG19621.1VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED
RPACG19622.1VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED
RPACG19623.1OS10G0105400 PROTEIN
RPACG19624.1OS10G0105400 PROTEIN
RPACG19625.1OS10G0105400 PROTEIN
RPACG19625.2
RPACG19626.1
RPACG19627.1
RPACG19628.1STANNIOCALCIN
RPACG19629.1
RPACG19630.1
RPACG19631.1
RPACG19632.1
RPACG19633.1
RPACG19634.1OS10G0105400 PROTEIN
RPACG19635.1
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