About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG15914.2
RPACG15915.1IG-LIKE DOMAIN-CONTAINING PROTEIN-RELATED
RPACG15916.1
RPACG15917.1
RPACG15918.1IG-LIKE DOMAIN-CONTAINING PROTEIN-RELATED
RPACG15918.2
RPACG15919.1
RPACG15920.1
RPACG15921.1IG-LIKE DOMAIN-CONTAINING PROTEIN-RELATED
RPACG15921.2
RPACG15922.1
RPACG15923.1
RPACG15924.1VIRGINIAMYCIN B LYASE
RPACG15924.2
RPACG15925.1
RPACG15925.2
RPACG15925.3
RPACG15926.1IG-LIKE DOMAIN-CONTAINING PROTEIN-RELATED
RPACG15926.2
RPACG15927.1
RPACG15928.1IG-LIKE DOMAIN-CONTAINING PROTEIN-RELATED
RPACG15929.1
RPACG15930.1
RPACG15931.1
RPACG15932.1
RPACG15933.1
RPACG15934.1LD33804P
RPACG15934.2
RPACG15934.3
RPACG15935.1
RPACG15935.2
RPACG15936.1
RPACG15937.1DUAL SPECIFICITY PROTEIN PHOSPHATASE
RPACG15937.2
RPACG15938.1-
RPACG15939.1
RPACG15940.1
RPACG15941.1-
RPACG15942.1
RPACG15942.2
RPACG15943.1
RPACG15943.2
RPACG15943.3
RPACG15944.1RAN GTPASE-ACTIVATING PROTEIN 1
RPACG15945.1LEUCINE RICH REPEAT FAMILY PROTEIN
RPACG15946.1LD27203P-RELATED
RPACG15947.1EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 12
RPACG15948.1MITOCHONDRIAL 2-OXODICARBOXYLATE CARRIER
RPACG15949.1MITOCHONDRIAL 2-OXODICARBOXYLATE CARRIER
RPACG15950.1
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