About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG15642.1FAST LEU-RICH DOMAIN-CONTAINING
RPACG15643.160S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT N
RPACG15644.1
RPACG15645.1RHO GUANINE EXCHANGE FACTOR-RELATED
RPACG15646.1
RPACG15647.1
RPACG15648.1
RPACG15649.1
RPACG15650.1LP04239P
RPACG15651.1PUR-TRANSCRIPTIONAL ACTIVATOR
RPACG15652.1U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B
RPACG15653.1VACUOLAR PROTEIN SORTING 26 RELATED
RPACG15654.1RAN BINDING PROTEIN 9-RELATED
RPACG15655.1AGAP008648-PA
RPACG15656.1XRP2 PROTEIN
RPACG15657.1
RPACG15658.1ACYL-COA SYNTHETASE
RPACG15659.1ACYL-COA SYNTHETASE
RPACG15660.1PROTEIN KISH-A
RPACG15661.1TRANSMEMBRANE PROTEIN 101
RPACG15662.1
RPACG15663.1
RPACG15664.1
RPACG15665.1
RPACG15666.1
RPACG15667.1
RPACG15667.2
RPACG15668.1VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN
RPACG15669.1TRANSMEMBRANE PROTEIN 249
RPACG15670.1MIP11318P
RPACG15671.1TESTIS-EXPRESSED PROTEIN 52
RPACG15672.1
RPACG15673.1
RPACG15674.1GH11727P
RPACG15675.1FANCONI ANEMIA GROUP E PROTEIN
RPACG15676.1
RPACG15677.1
RPACG15678.1
RPACG15679.1
RPACG15680.1
RPACG15681.1GLUTAMATE 5-KINASE
RPACG15682.1
RPACG15683.1
RPACG15683.2
RPACG15684.1
RPACG15685.1
RPACG15686.1
RPACG15687.1
RPACG15688.1
RPACG15689.1
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