About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG15462.2
RPACG15463.1
RPACG15464.1
RPACG15465.1
RPACG15466.1
RPACG15467.1
RPACG15468.1
RPACG15469.1
RPACG15470.1ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN
RPACG15471.1RHO FAMILY GTPASE
RPACG15472.1TETRASPANIN
RPACG15473.1
RPACG15474.1PRENYLATED RAB ACCEPTOR 1-RELATED
RPACG15474.2
RPACG15475.1REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED
RPACG15476.1LEUCINE-RICH REPEAT-CONTAINING PROTEIN 51
RPACG15477.1
RPACG15478.1FMRFAMIDE RECEPTOR-RELATED
RPACG15479.1
RPACG15480.1
RPACG15480.2
RPACG15481.1
RPACG15482.1MATING RESPONSE PROTEIN POI2
RPACG15483.1
RPACG15484.1UNCHARACTERIZED
RPACG15485.1
RPACG15486.1
RPACG15487.1
RPACG15488.1
RPACG15489.1
RPACG15490.1
RPACG15491.1
RPACG15492.1
RPACG15493.1OS10G0105400 PROTEIN
RPACG15493.2
RPACG15494.1OS10G0105400 PROTEIN
RPACG15495.1OS10G0105400 PROTEIN
RPACG15496.1OS10G0105400 PROTEIN
RPACG15497.1OS10G0105400 PROTEIN
RPACG15498.1OS10G0105400 PROTEIN
RPACG15499.1STANNIOCALCIN
RPACG15500.1OS10G0105400 PROTEIN
RPACG15501.1
RPACG15502.1
RPACG15503.1OS10G0105400 PROTEIN
RPACG15503.2
RPACG15504.1OS10G0105400 PROTEIN
RPACG15505.1OS10G0105400 PROTEIN
RPACG15506.1
RPACG15506.2
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