About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG15373.1
RPACG15374.1IONOTROPIC GLUTAMATE RECEPTOR
RPACG15375.1
RPACG15376.1
RPACG15377.1
RPACG15378.1PROTEIN KINASE DOMAIN-CONTAINING PROTEIN
RPACG15379.1UBIQUITIN DOMAIN CONTAINING 1 PROTEIN-RELATED
RPACG15380.1DNA REPAIR/TRANSCRIPTION PROTEIN MET18/MMS19
RPACG15381.1UBIQUITIN-LIKE DOMAIN-CONTAINING PROTEIN
RPACG15382.1
RPACG15383.1
RPACG15383.2
RPACG15384.1
RPACG15385.1
RPACG15386.1
RPACG15387.1
RPACG15388.1
RPACG15389.1
RPACG15390.1METHYLTRANSFERASE, FKBM FAMILY PROTEIN
RPACG15391.1CRUMBS FAMILY MEMBER
RPACG15392.1
RPACG15393.1
RPACG15394.1
RPACG15395.1HOMEOBOX PROTEIN NKX
RPACG15396.1
RPACG15397.1TOUCAN, ISOFORM A
RPACG15398.1CADHERIN DOMAIN-CONTAINING PROTEIN
RPACG15399.1
RPACG15400.1
RPACG15401.1
RPACG15402.1
RPACG15403.1
RPACG15404.1VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 3B
RPACG15404.2
RPACG15405.1
RPACG15405.2
RPACG15406.1VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 3B
RPACG15407.1
RPACG15408.1
RPACG15409.1VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 3B
RPACG15410.1PALMITOYLTRANSFERASE ZDHHC16
RPACG15411.1
RPACG15412.1
RPACG15413.1
RPACG15414.1
RPACG15415.1
RPACG15415.2
RPACG15416.1
RPACG15417.1BILIVERDIN REDUCTASE A
RPACG15418.1COLLAGEN IV NC1 DOMAIN-CONTAINING PROTEIN
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