About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG15992.1
RPACG15993.1PROTEIN BHLHB9-RELATED
RPACG15994.1
RPACG15995.1
RPACG15996.1CARBONIC ANHYDRASE
RPACG15996.2
RPACG15997.1CARBONIC ANHYDRASE
RPACG15998.1PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED
RPACG15999.1
RPACG16000.1
RPACG16001.1CARBONIC ANHYDRASE
RPACG16002.1
RPACG16003.1DIHYDROOROTATE DEHYDROGENASE (QUINONE), MITOCHONDRIAL-RELATED
RPACG16004.1UBIQUITIN-CONJUGATING ENZYME E2
RPACG16004.2
RPACG16005.1CYTOCHROME B-245 LIGHT CHAIN
RPACG16006.1
RPACG16006.2
RPACG16007.1SPIRE
RPACG16008.1
RPACG16009.1CRANIOFACIAL DEVELOPMENT PROTEIN 1
RPACG16010.1UNCHARACTERIZED
RPACG16011.1HEAT SHOCK FACTOR BINDING PROTEIN 1
RPACG16012.1GLYCOLIPID TRANSFER PROTEIN-RELATED
RPACG16013.1
RPACG16014.1
RPACG16015.1C3ORF6 PROTEIN-RELATED
RPACG16016.1
RPACG16016.2
RPACG16016.3
RPACG16016.4
RPACG16016.5
RPACG16017.1
RPACG16018.1
RPACG16019.1
RPACG16020.1NEUROTRANSMITTER GATED ION CHANNEL
RPACG16021.1
RPACG16022.1UNCHARACTERIZED
RPACG16023.1NEUROTRANSMITTER GATED ION CHANNEL
RPACG16024.1
RPACG16025.1
RPACG16026.1
RPACG16027.1
RPACG16028.1
RPACG16029.1
RPACG16030.1
RPACG16031.1
RPACG16032.1
RPACG16033.1
RPACG16034.1
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